Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC28.84■■■□□ 2.21
CCDC60Q8IWA6 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC28.84■■■□□ 2.21
CCDC60Q8IWA6 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC28.83■■■□□ 2.21
CCDC60Q8IWA6 CHST11-202ENST00000546689 756 ntTSL 2 BASIC28.83■■■□□ 2.21
CCDC60Q8IWA6 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC28.82■■■□□ 2.2
CCDC60Q8IWA6 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC28.82■■■□□ 2.2
CCDC60Q8IWA6 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC28.82■■■□□ 2.2
CCDC60Q8IWA6 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
CCDC60Q8IWA6 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
CCDC60Q8IWA6 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC28.8■■■□□ 2.2
CCDC60Q8IWA6 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
CCDC60Q8IWA6 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC28.78■■■□□ 2.2
CCDC60Q8IWA6 ABCB10P1-201ENST00000614297 2181 ntBASIC28.78■■■□□ 2.2
CCDC60Q8IWA6 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
CCDC60Q8IWA6 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC28.77■■■□□ 2.2
CCDC60Q8IWA6 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC28.77■■■□□ 2.2
CCDC60Q8IWA6 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC28.76■■■□□ 2.19
CCDC60Q8IWA6 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
CCDC60Q8IWA6 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
CCDC60Q8IWA6 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC28.75■■■□□ 2.19
CCDC60Q8IWA6 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC28.75■■■□□ 2.19
CCDC60Q8IWA6 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC28.75■■■□□ 2.19
CCDC60Q8IWA6 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
CCDC60Q8IWA6 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC28.74■■■□□ 2.19
CCDC60Q8IWA6 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC28.74■■■□□ 2.19
CCDC60Q8IWA6 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC28.74■■■□□ 2.19
CCDC60Q8IWA6 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC28.73■■■□□ 2.19
CCDC60Q8IWA6 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC28.73■■■□□ 2.19
CCDC60Q8IWA6 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC28.73■■■□□ 2.19
CCDC60Q8IWA6 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC28.72■■■□□ 2.19
CCDC60Q8IWA6 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC28.72■■■□□ 2.19
CCDC60Q8IWA6 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC28.72■■■□□ 2.19
CCDC60Q8IWA6 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
CCDC60Q8IWA6 AGAP3-216ENST00000479901 1881 ntTSL 5 BASIC28.72■■■□□ 2.19
CCDC60Q8IWA6 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC28.71■■■□□ 2.19
CCDC60Q8IWA6 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
CCDC60Q8IWA6 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC28.71■■■□□ 2.19
CCDC60Q8IWA6 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC28.71■■■□□ 2.19
CCDC60Q8IWA6 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
CCDC60Q8IWA6 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC28.7■■■□□ 2.18
CCDC60Q8IWA6 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.18
CCDC60Q8IWA6 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
CCDC60Q8IWA6 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC28.69■■■□□ 2.18
CCDC60Q8IWA6 CGREF1-203ENST00000402394 1906 ntAPPRIS P2 TSL 2 BASIC28.69■■■□□ 2.18
CCDC60Q8IWA6 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
CCDC60Q8IWA6 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC28.69■■■□□ 2.18
CCDC60Q8IWA6 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC28.68■■■□□ 2.18
CCDC60Q8IWA6 AC110285.7-201ENST00000624417 1536 ntBASIC28.68■■■□□ 2.18
CCDC60Q8IWA6 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC28.68■■■□□ 2.18
CCDC60Q8IWA6 MEST-211ENST00000437945 1455 ntTSL 5 BASIC28.67■■■□□ 2.18
CCDC60Q8IWA6 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
CCDC60Q8IWA6 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC28.67■■■□□ 2.18
CCDC60Q8IWA6 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC28.66■■■□□ 2.18
CCDC60Q8IWA6 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC28.66■■■□□ 2.18
CCDC60Q8IWA6 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CCDC60Q8IWA6 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
CCDC60Q8IWA6 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC28.66■■■□□ 2.18
CCDC60Q8IWA6 FOXQ1-201ENST00000296839 2309 ntAPPRIS P1 BASIC28.65■■■□□ 2.18
CCDC60Q8IWA6 AP004833.2-201ENST00000532228 1454 ntBASIC28.65■■■□□ 2.18
CCDC60Q8IWA6 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
CCDC60Q8IWA6 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
CCDC60Q8IWA6 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
CCDC60Q8IWA6 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
CCDC60Q8IWA6 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
CCDC60Q8IWA6 AL139393.2-201ENST00000608721 2025 ntBASIC28.63■■■□□ 2.17
CCDC60Q8IWA6 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC28.63■■■□□ 2.17
CCDC60Q8IWA6 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC28.62■■■□□ 2.17
CCDC60Q8IWA6 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC28.62■■■□□ 2.17
CCDC60Q8IWA6 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC28.62■■■□□ 2.17
CCDC60Q8IWA6 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
CCDC60Q8IWA6 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC28.62■■■□□ 2.17
CCDC60Q8IWA6 EFNA3-201ENST00000368408 1782 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
CCDC60Q8IWA6 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC28.61■■■□□ 2.17
CCDC60Q8IWA6 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC28.61■■■□□ 2.17
CCDC60Q8IWA6 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC28.6■■■□□ 2.17
CCDC60Q8IWA6 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC28.6■■■□□ 2.17
CCDC60Q8IWA6 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC28.6■■■□□ 2.17
CCDC60Q8IWA6 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
CCDC60Q8IWA6 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC28.59■■■□□ 2.17
CCDC60Q8IWA6 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC28.58■■■□□ 2.17
CCDC60Q8IWA6 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
CCDC60Q8IWA6 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
CCDC60Q8IWA6 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
CCDC60Q8IWA6 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
CCDC60Q8IWA6 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC28.58■■■□□ 2.17
CCDC60Q8IWA6 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC28.58■■■□□ 2.17
CCDC60Q8IWA6 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC28.58■■■□□ 2.17
CCDC60Q8IWA6 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC28.58■■■□□ 2.17
CCDC60Q8IWA6 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC28.58■■■□□ 2.17
CCDC60Q8IWA6 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC28.58■■■□□ 2.17
CCDC60Q8IWA6 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
CCDC60Q8IWA6 AC100797.4-201ENST00000631653 1827 ntBASIC28.57■■■□□ 2.16
CCDC60Q8IWA6 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC28.57■■■□□ 2.16
CCDC60Q8IWA6 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC28.57■■■□□ 2.16
CCDC60Q8IWA6 PEX7-203ENST00000541292 945 ntTSL 5 BASIC28.57■■■□□ 2.16
CCDC60Q8IWA6 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC28.57■■■□□ 2.16
CCDC60Q8IWA6 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC28.57■■■□□ 2.16
CCDC60Q8IWA6 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC28.57■■■□□ 2.16
CCDC60Q8IWA6 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC28.57■■■□□ 2.16
CCDC60Q8IWA6 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC28.57■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms