Protein–RNA interactions for Protein: Q8C7M3

Trim9, E3 ubiquitin-protein ligase TRIM9, mousemouse

Predictions only

Length 817 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim9Q8C7M3 AC153890.1-201ENSMUST00000220021 2469 ntBASIC26.25■■□□□ 1.79
Trim9Q8C7M3 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
Trim9Q8C7M3 Gm42809-201ENSMUST00000198429 1138 ntBASIC26.24■■□□□ 1.79
Trim9Q8C7M3 Nkain2-201ENSMUST00000092602 558 ntBASIC26.23■■□□□ 1.79
Trim9Q8C7M3 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Trim9Q8C7M3 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC26.23■■□□□ 1.79
Trim9Q8C7M3 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
Trim9Q8C7M3 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC26.22■■□□□ 1.79
Trim9Q8C7M3 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trim9Q8C7M3 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trim9Q8C7M3 Maf-201ENSMUST00000069009 3223 ntAPPRIS ALT2 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trim9Q8C7M3 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
Trim9Q8C7M3 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC26.2■■□□□ 1.79
Trim9Q8C7M3 AC150314.2-201ENSMUST00000214135 834 ntTSL 5 BASIC26.2■■□□□ 1.78
Trim9Q8C7M3 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
Trim9Q8C7M3 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC26.19■■□□□ 1.78
Trim9Q8C7M3 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
Trim9Q8C7M3 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC26.19■■□□□ 1.78
Trim9Q8C7M3 Ebf4-203ENSMUST00000110288 2982 ntAPPRIS ALT2 TSL 5 BASIC26.19■■□□□ 1.78
Trim9Q8C7M3 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Trim9Q8C7M3 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
Trim9Q8C7M3 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
Trim9Q8C7M3 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC26.17■■□□□ 1.78
Trim9Q8C7M3 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC26.17■■□□□ 1.78
Trim9Q8C7M3 Gm12523-201ENSMUST00000148844 599 ntTSL 5 BASIC26.17■■□□□ 1.78
Trim9Q8C7M3 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC26.16■■□□□ 1.78
Trim9Q8C7M3 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC26.16■■□□□ 1.78
Trim9Q8C7M3 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC26.16■■□□□ 1.78
Trim9Q8C7M3 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Trim9Q8C7M3 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
Trim9Q8C7M3 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC26.15■■□□□ 1.78
Trim9Q8C7M3 AC122428.3-201ENSMUST00000215551 2290 ntBASIC26.14■■□□□ 1.78
Trim9Q8C7M3 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC26.14■■□□□ 1.78
Trim9Q8C7M3 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
Trim9Q8C7M3 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC26.14■■□□□ 1.77
Trim9Q8C7M3 Tmem200b-201ENSMUST00000094666 1370 ntAPPRIS P1 BASIC26.11■■□□□ 1.77
Trim9Q8C7M3 Gm9939-201ENSMUST00000067161 1154 ntBASIC26.11■■□□□ 1.77
Trim9Q8C7M3 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Trim9Q8C7M3 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
Trim9Q8C7M3 Clk2-202ENSMUST00000121212 2154 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
Trim9Q8C7M3 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC26.08■■□□□ 1.77
Trim9Q8C7M3 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
Trim9Q8C7M3 Map2k7-207ENSMUST00000110999 1578 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
Trim9Q8C7M3 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC26.07■■□□□ 1.76
Trim9Q8C7M3 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC26.06■■□□□ 1.76
Trim9Q8C7M3 Gm37847-201ENSMUST00000192163 1497 ntBASIC26.05■■□□□ 1.76
Trim9Q8C7M3 Gm31748-201ENSMUST00000194938 1497 ntBASIC26.05■■□□□ 1.76
Trim9Q8C7M3 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Trim9Q8C7M3 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC26.05■■□□□ 1.76
Trim9Q8C7M3 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
Trim9Q8C7M3 Arhgdia-201ENSMUST00000067936 2150 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
Trim9Q8C7M3 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC26.04■■□□□ 1.76
Trim9Q8C7M3 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
Trim9Q8C7M3 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
Trim9Q8C7M3 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC26.02■■□□□ 1.76
Trim9Q8C7M3 Cnnm3-201ENSMUST00000001166 5193 ntAPPRIS P4 TSL 1 (best) BASIC26.02■■□□□ 1.76
Trim9Q8C7M3 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
Trim9Q8C7M3 Gm19582-201ENSMUST00000187511 841 ntTSL 2 BASIC26■■□□□ 1.75
Trim9Q8C7M3 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Trim9Q8C7M3 Maz-201ENSMUST00000032916 2347 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
Trim9Q8C7M3 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Trim9Q8C7M3 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC25.99■■□□□ 1.75
Trim9Q8C7M3 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
Trim9Q8C7M3 Particl-201ENSMUST00000205370 1560 ntBASIC25.99■■□□□ 1.75
Trim9Q8C7M3 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
Trim9Q8C7M3 Gm6821-201ENSMUST00000107540 542 ntBASIC25.98■■□□□ 1.75
Trim9Q8C7M3 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC25.98■■□□□ 1.75
Trim9Q8C7M3 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC25.98■■□□□ 1.75
Trim9Q8C7M3 Bin1-202ENSMUST00000091967 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
Trim9Q8C7M3 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC25.97■■□□□ 1.75
Trim9Q8C7M3 Gm960-204ENSMUST00000225896 2202 ntAPPRIS ALT2 BASIC25.95■■□□□ 1.75
Trim9Q8C7M3 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC25.95■■□□□ 1.74
Trim9Q8C7M3 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC25.95■■□□□ 1.74
Trim9Q8C7M3 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC25.95■■□□□ 1.74
Trim9Q8C7M3 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC25.95■■□□□ 1.74
Trim9Q8C7M3 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC25.94■■□□□ 1.74
Trim9Q8C7M3 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Trim9Q8C7M3 Cadm1-209ENSMUST00000152459 1784 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
Trim9Q8C7M3 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC25.94■■□□□ 1.74
Trim9Q8C7M3 Mxd4-202ENSMUST00000119171 1160 ntTSL 1 (best) BASIC25.92■■□□□ 1.74
Trim9Q8C7M3 Tsen34-211ENSMUST00000205287 1375 ntTSL 5 BASIC25.92■■□□□ 1.74
Trim9Q8C7M3 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC25.91■■□□□ 1.74
Trim9Q8C7M3 Phlda3-201ENSMUST00000038945 1435 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Trim9Q8C7M3 Ell2-205ENSMUST00000222194 434 ntTSL 3 BASIC25.91■■□□□ 1.74
Trim9Q8C7M3 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
Trim9Q8C7M3 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
Trim9Q8C7M3 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC25.9■■□□□ 1.74
Trim9Q8C7M3 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC25.9■■□□□ 1.74
Trim9Q8C7M3 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC25.9■■□□□ 1.74
Trim9Q8C7M3 Gm8503-201ENSMUST00000118131 455 ntBASIC25.89■■□□□ 1.74
Trim9Q8C7M3 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
Trim9Q8C7M3 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC25.88■■□□□ 1.73
Trim9Q8C7M3 Gm26536-201ENSMUST00000181072 1196 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
Trim9Q8C7M3 Eci1-201ENSMUST00000024946 1091 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Trim9Q8C7M3 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
Trim9Q8C7M3 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Trim9Q8C7M3 Cln6-201ENSMUST00000034776 2142 ntAPPRIS P1 TSL 1 (best) BASIC25.87■■□□□ 1.73
Trim9Q8C7M3 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Trim9Q8C7M3 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Trim9Q8C7M3 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
Retrieved 100 of 76,532 protein–RNA pairs in 81.1 ms