Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Gm13889-202ENSMUST00000148314 1240 ntAPPRIS P1 BASIC34.07■■■■□ 3.04
Usp47Q8BY87 Ptpn18-206ENSMUST00000188972 414 ntTSL 1 (best) BASIC34.07■■■■□ 3.04
Usp47Q8BY87 Mogs-201ENSMUST00000032114 2780 ntAPPRIS P1 TSL 1 (best) BASIC34.07■■■■□ 3.04
Usp47Q8BY87 AC131739.1-201ENSMUST00000221692 1245 ntBASIC34.06■■■■□ 3.04
Usp47Q8BY87 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC34.04■■■■□ 3.04
Usp47Q8BY87 Tada2b-202ENSMUST00000119916 1321 ntTSL 5 BASIC34.03■■■■□ 3.04
Usp47Q8BY87 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC34.02■■■■□ 3.04
Usp47Q8BY87 Klhl25-205ENSMUST00000206019 2299 ntAPPRIS P1 TSL 1 (best) BASIC34.01■■■■□ 3.03
Usp47Q8BY87 Fam89a-201ENSMUST00000055257 1338 ntAPPRIS P1 TSL 1 (best) BASIC34■■■■□ 3.03
Usp47Q8BY87 Fam89b-202ENSMUST00000116558 1189 ntTSL 1 (best) BASIC33.98■■■■□ 3.03
Usp47Q8BY87 Pcbd2-201ENSMUST00000021958 544 ntTSL 1 (best) BASIC33.98■■■■□ 3.03
Usp47Q8BY87 Tceal3-201ENSMUST00000060904 1116 ntAPPRIS P1 TSL 1 (best) BASIC33.98■■■■□ 3.03
Usp47Q8BY87 Pard6a-201ENSMUST00000093195 1265 ntAPPRIS P3 TSL 1 (best) BASIC33.98■■■■□ 3.03
Usp47Q8BY87 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC33.97■■■■□ 3.03
Usp47Q8BY87 Ube2j2-205ENSMUST00000105583 1434 ntTSL 1 (best) BASIC33.97■■■■□ 3.03
Usp47Q8BY87 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC33.97■■■■□ 3.03
Usp47Q8BY87 Hmgn3-202ENSMUST00000162246 983 ntAPPRIS P4 TSL 1 (best) BASIC33.96■■■■□ 3.03
Usp47Q8BY87 Chpt1-204ENSMUST00000117579 1043 ntAPPRIS ALT2 TSL 1 (best) BASIC33.95■■■■□ 3.02
Usp47Q8BY87 Tmpo-205ENSMUST00000105293 1842 ntTSL 1 (best) BASIC33.95■■■■□ 3.02
Usp47Q8BY87 Nek6-202ENSMUST00000112895 1513 ntAPPRIS P1 TSL 1 (best) BASIC33.93■■■■□ 3.02
Usp47Q8BY87 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC33.9■■■■□ 3.02
Usp47Q8BY87 Rab43-202ENSMUST00000032135 1262 ntTSL 1 (best) BASIC33.89■■■■□ 3.02
Usp47Q8BY87 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC33.88■■■■□ 3.01
Usp47Q8BY87 Gm28513-201ENSMUST00000191474 613 ntTSL 3 BASIC33.87■■■■□ 3.01
Usp47Q8BY87 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC33.87■■■■□ 3.01
Usp47Q8BY87 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC33.86■■■■□ 3.01
Usp47Q8BY87 Fezf2-202ENSMUST00000224023 1917 ntBASIC33.85■■■■□ 3.01
Usp47Q8BY87 Tmbim4-204ENSMUST00000134797 486 ntTSL 1 (best) BASIC33.85■■■■□ 3.01
Usp47Q8BY87 Ppp1r14c-202ENSMUST00000217573 2013 ntTSL 1 (best) BASIC33.83■■■■□ 3.01
Usp47Q8BY87 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC33.83■■■■□ 3.01
Usp47Q8BY87 Tceal3-202ENSMUST00000113100 1148 ntAPPRIS P1 TSL 1 (best) BASIC33.83■■■■□ 3.01
Usp47Q8BY87 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC33.82■■■■□ 3.01
Usp47Q8BY87 Krtap28-13-201ENSMUST00000188005 992 ntAPPRIS P1 BASIC33.82■■■■□ 3
Usp47Q8BY87 Esrra-201ENSMUST00000025906 2242 ntAPPRIS P1 TSL 1 (best) BASIC33.8■■■■□ 3
Usp47Q8BY87 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC33.78■■■■□ 3
Usp47Q8BY87 Gm37136-201ENSMUST00000194368 194 ntBASIC33.78■■■■□ 3
Usp47Q8BY87 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC33.78■■■■□ 3
Usp47Q8BY87 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC33.77■■■■□ 3
Usp47Q8BY87 Adprhl2-201ENSMUST00000102617 1672 ntAPPRIS P1 TSL 1 (best) BASIC33.77■■■■□ 3
Usp47Q8BY87 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC33.77■■■■□ 3
Usp47Q8BY87 Ccdc136-206ENSMUST00000145310 1703 ntAPPRIS ALT2 TSL 5 BASIC33.75■■■□□ 2.99
Usp47Q8BY87 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
Usp47Q8BY87 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC33.75■■■□□ 2.99
Usp47Q8BY87 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC33.73■■■□□ 2.99
Usp47Q8BY87 E130218I03Rik-204ENSMUST00000131447 888 ntAPPRIS P1 TSL 5 BASIC33.73■■■□□ 2.99
Usp47Q8BY87 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC33.73■■■□□ 2.99
Usp47Q8BY87 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC33.73■■■□□ 2.99
Usp47Q8BY87 Dbp-204ENSMUST00000211513 1156 ntTSL 5 BASIC33.72■■■□□ 2.99
Usp47Q8BY87 Tsen34-201ENSMUST00000038521 1365 ntAPPRIS P1 TSL 5 BASIC33.72■■■□□ 2.99
Usp47Q8BY87 Trappc6b-203ENSMUST00000217863 797 ntTSL 2 BASIC33.72■■■□□ 2.99
Usp47Q8BY87 Zcrb1-201ENSMUST00000076070 877 ntAPPRIS P3 TSL 1 (best) BASIC33.72■■■□□ 2.99
Usp47Q8BY87 Asf1a-205ENSMUST00000219282 1150 ntTSL 5 BASIC33.7■■■□□ 2.98
Usp47Q8BY87 Chtf8-205ENSMUST00000176515 694 ntTSL 2 BASIC33.69■■■□□ 2.98
Usp47Q8BY87 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC33.69■■■□□ 2.98
Usp47Q8BY87 Rpl31-203ENSMUST00000179954 630 ntAPPRIS P1 TSL 1 (best) BASIC33.68■■■□□ 2.98
Usp47Q8BY87 Fus-204ENSMUST00000121616 1102 ntTSL 1 (best) BASIC33.67■■■□□ 2.98
Usp47Q8BY87 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC33.66■■■□□ 2.98
Usp47Q8BY87 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC33.66■■■□□ 2.98
Usp47Q8BY87 Terf2-203ENSMUST00000116425 2471 ntTSL 1 (best) BASIC33.66■■■□□ 2.98
Usp47Q8BY87 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC33.65■■■□□ 2.98
Usp47Q8BY87 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC33.64■■■□□ 2.98
Usp47Q8BY87 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC33.64■■■□□ 2.98
Usp47Q8BY87 AC167019.3-201ENSMUST00000228225 1266 ntBASIC33.63■■■□□ 2.97
Usp47Q8BY87 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC33.63■■■□□ 2.97
Usp47Q8BY87 Gm28592-201ENSMUST00000186844 741 ntTSL 5 BASIC33.6■■■□□ 2.97
Usp47Q8BY87 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC33.6■■■□□ 2.97
Usp47Q8BY87 Ccnyl1-203ENSMUST00000187170 1506 ntAPPRIS P1 TSL 5 BASIC33.6■■■□□ 2.97
Usp47Q8BY87 Dnttip1-201ENSMUST00000017443 1664 ntAPPRIS P1 TSL 1 (best) BASIC33.6■■■□□ 2.97
Usp47Q8BY87 Krtap17-1-201ENSMUST00000105049 761 ntAPPRIS P1 BASIC33.6■■■□□ 2.97
Usp47Q8BY87 D16Ertd472e-201ENSMUST00000114218 1271 ntAPPRIS P1 TSL 5 BASIC33.6■■■□□ 2.97
Usp47Q8BY87 Sntb1-202ENSMUST00000110200 1225 ntTSL 1 (best) BASIC33.59■■■□□ 2.97
Usp47Q8BY87 Gm37847-201ENSMUST00000192163 1497 ntBASIC33.58■■■□□ 2.97
Usp47Q8BY87 Gm31748-201ENSMUST00000194938 1497 ntBASIC33.58■■■□□ 2.97
Usp47Q8BY87 Gm14121-201ENSMUST00000121441 1380 ntBASIC33.58■■■□□ 2.97
Usp47Q8BY87 AC158592.1-201ENSMUST00000215560 1113 ntTSL 5 BASIC33.58■■■□□ 2.97
Usp47Q8BY87 1110008P14Rik-201ENSMUST00000048792 680 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
Usp47Q8BY87 Izumo4-205ENSMUST00000218184 1196 ntAPPRIS P1 TSL 2 BASIC33.57■■■□□ 2.96
Usp47Q8BY87 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC33.57■■■□□ 2.96
Usp47Q8BY87 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
Usp47Q8BY87 Nudt9-201ENSMUST00000031250 1488 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
Usp47Q8BY87 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC33.55■■■□□ 2.96
Usp47Q8BY87 Gm26917-201ENSMUST00000182520 869 ntTSL 5 BASIC33.54■■■□□ 2.96
Usp47Q8BY87 Phf23-201ENSMUST00000018716 2006 ntAPPRIS P3 TSL 1 (best) BASIC33.54■■■□□ 2.96
Usp47Q8BY87 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
Usp47Q8BY87 Mad2l2-202ENSMUST00000084129 1162 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
Usp47Q8BY87 Mrps15-201ENSMUST00000030675 937 ntAPPRIS P1 TSL 1 (best) BASIC33.52■■■□□ 2.96
Usp47Q8BY87 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC33.52■■■□□ 2.96
Usp47Q8BY87 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC33.51■■■□□ 2.95
Usp47Q8BY87 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.95
Usp47Q8BY87 Rp9-201ENSMUST00000034763 1134 ntAPPRIS P2 TSL 1 (best) BASIC33.5■■■□□ 2.95
Usp47Q8BY87 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC33.5■■■□□ 2.95
Usp47Q8BY87 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC33.5■■■□□ 2.95
Usp47Q8BY87 Reep6-202ENSMUST00000105354 2208 ntAPPRIS P3 TSL 1 (best) BASIC33.5■■■□□ 2.95
Usp47Q8BY87 Reep6-205ENSMUST00000105358 2208 ntTSL 1 (best) BASIC33.5■■■□□ 2.95
Usp47Q8BY87 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC33.49■■■□□ 2.95
Usp47Q8BY87 Efhd1os-201ENSMUST00000138844 332 ntTSL 3 BASIC33.48■■■□□ 2.95
Usp47Q8BY87 Gm16764-201ENSMUST00000138891 541 ntTSL 5 BASIC33.47■■■□□ 2.95
Usp47Q8BY87 B230322F03Rik-201ENSMUST00000181932 1569 ntBASIC33.47■■■□□ 2.95
Usp47Q8BY87 Gm11175-201ENSMUST00000116172 543 ntBASIC33.47■■■□□ 2.95
Usp47Q8BY87 Znrf1-207ENSMUST00000173506 1238 ntAPPRIS P1 TSL 2 BASIC33.47■■■□□ 2.95
Retrieved 100 of 76,532 protein–RNA pairs in 30.5 ms