Protein–RNA interactions for Protein: Q63870

Col7a1, Collagen alpha-1(VII) chain, mousemouse

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col7a1Q63870 Slc37a3-211ENSMUST00000202749 434 ntTSL 5 BASIC20.71■□□□□ 0.91
Col7a1Q63870 Gm10420-201ENSMUST00000121713 882 ntBASIC20.7■□□□□ 0.9
Col7a1Q63870 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
Col7a1Q63870 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Col7a1Q63870 Gm15820-201ENSMUST00000201566 728 ntBASIC20.7■□□□□ 0.9
Col7a1Q63870 Hmox2-202ENSMUST00000118885 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col7a1Q63870 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col7a1Q63870 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
Col7a1Q63870 Gm26699-201ENSMUST00000180825 2291 ntTSL 5 BASIC20.68■□□□□ 0.9
Col7a1Q63870 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Col7a1Q63870 Mt2-201ENSMUST00000034214 511 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col7a1Q63870 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Col7a1Q63870 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Col7a1Q63870 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Col7a1Q63870 Aldoa-214ENSMUST00000207534 741 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
Col7a1Q63870 Nenf-201ENSMUST00000046770 742 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col7a1Q63870 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
Col7a1Q63870 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
Col7a1Q63870 Phf2os1-201ENSMUST00000123212 498 ntTSL 3 BASIC20.65■□□□□ 0.9
Col7a1Q63870 Gm2415-202ENSMUST00000134688 401 ntTSL 2 BASIC20.65■□□□□ 0.9
Col7a1Q63870 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col7a1Q63870 Popdc3-201ENSMUST00000019994 1853 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Col7a1Q63870 AC154454.1-201ENSMUST00000225253 216 ntBASIC20.64■□□□□ 0.89
Col7a1Q63870 Ccdc85c-201ENSMUST00000136175 1302 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
Col7a1Q63870 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col7a1Q63870 Gm45102-201ENSMUST00000207427 857 ntBASIC20.63■□□□□ 0.89
Col7a1Q63870 Rpl35-201ENSMUST00000080861 946 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Col7a1Q63870 Sin3b-202ENSMUST00000109950 1024 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Col7a1Q63870 Zic2-201ENSMUST00000075888 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col7a1Q63870 Phf10-201ENSMUST00000024657 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col7a1Q63870 Rps24-207ENSMUST00000224568 714 ntBASIC20.62■□□□□ 0.89
Col7a1Q63870 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Col7a1Q63870 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col7a1Q63870 Polr1d-201ENSMUST00000050970 1196 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Col7a1Q63870 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Col7a1Q63870 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Col7a1Q63870 Raly-203ENSMUST00000109701 1709 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col7a1Q63870 Hspd1-201ENSMUST00000027123 2423 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col7a1Q63870 Tm2d2-201ENSMUST00000033961 1281 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col7a1Q63870 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col7a1Q63870 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Col7a1Q63870 Rhobtb3-202ENSMUST00000109606 1676 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Col7a1Q63870 Socs2-202ENSMUST00000119917 948 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col7a1Q63870 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC20.58■□□□□ 0.89
Col7a1Q63870 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
Col7a1Q63870 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
Col7a1Q63870 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col7a1Q63870 Tmem259-201ENSMUST00000052885 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Col7a1Q63870 Nudc-201ENSMUST00000030665 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col7a1Q63870 Coprs-201ENSMUST00000033839 793 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col7a1Q63870 Pkig-202ENSMUST00000099105 640 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
Col7a1Q63870 Eif4e2-203ENSMUST00000113230 1569 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Col7a1Q63870 AC102554.1-201ENSMUST00000216236 537 ntTSL 5 BASIC20.57■□□□□ 0.88
Col7a1Q63870 AC153911.1-201ENSMUST00000220378 758 ntBASIC20.57■□□□□ 0.88
Col7a1Q63870 Rpia-201ENSMUST00000066134 1829 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Col7a1Q63870 Foxd3-201ENSMUST00000087285 2324 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
Col7a1Q63870 Tcfl5-201ENSMUST00000037877 2225 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col7a1Q63870 Tmem42-201ENSMUST00000084733 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col7a1Q63870 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Col7a1Q63870 Gm26711-201ENSMUST00000180866 1833 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Col7a1Q63870 Gm14117-201ENSMUST00000122417 843 ntBASIC20.55■□□□□ 0.88
Col7a1Q63870 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
Col7a1Q63870 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Col7a1Q63870 Gm20109-201ENSMUST00000180802 671 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Col7a1Q63870 AC151971.4-201ENSMUST00000214717 704 ntBASIC20.53■□□□□ 0.88
Col7a1Q63870 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Col7a1Q63870 Tspan3-201ENSMUST00000034876 1716 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Col7a1Q63870 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Col7a1Q63870 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
Col7a1Q63870 Gm30023-201ENSMUST00000197970 889 ntBASIC20.52■□□□□ 0.88
Col7a1Q63870 Gm12818-201ENSMUST00000117562 1349 ntBASIC20.52■□□□□ 0.87
Col7a1Q63870 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Col7a1Q63870 Hpf1-204ENSMUST00000146863 531 ntTSL 2 BASIC20.51■□□□□ 0.87
Col7a1Q63870 Mir3960-201ENSMUST00000198213 73 ntBASIC20.51■□□□□ 0.87
Col7a1Q63870 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
Col7a1Q63870 Gjc1-201ENSMUST00000068933 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col7a1Q63870 Gemin7-202ENSMUST00000117222 1023 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
Col7a1Q63870 Azin2-203ENSMUST00000119354 1921 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Col7a1Q63870 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC20.49■□□□□ 0.87
Col7a1Q63870 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col7a1Q63870 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Col7a1Q63870 Gnas-207ENSMUST00000109085 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Col7a1Q63870 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Col7a1Q63870 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Col7a1Q63870 Ssbp3-202ENSMUST00000072753 1924 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Col7a1Q63870 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC20.47■□□□□ 0.87
Col7a1Q63870 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC20.47■□□□□ 0.87
Col7a1Q63870 Ipmk-202ENSMUST00000118381 1323 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
Col7a1Q63870 Pkdcc-204ENSMUST00000170794 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col7a1Q63870 Fam241a-202ENSMUST00000199273 2234 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col7a1Q63870 Trnau1ap-203ENSMUST00000105962 961 ntTSL 5 BASIC20.47■□□□□ 0.87
Col7a1Q63870 Hrasls-204ENSMUST00000162747 854 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
Col7a1Q63870 Fam92a-208ENSMUST00000177837 1325 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Col7a1Q63870 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC20.45■□□□□ 0.86
Col7a1Q63870 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC20.45■□□□□ 0.86
Col7a1Q63870 Eif5a-208ENSMUST00000108611 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col7a1Q63870 Gm12905-201ENSMUST00000153814 658 ntTSL 2 BASIC20.44■□□□□ 0.86
Col7a1Q63870 Pdia5-201ENSMUST00000023550 1808 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Col7a1Q63870 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Col7a1Q63870 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 13.6 ms