Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Rab40c-201ENSMUST00000026826 2466 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
Cln3Q61124 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
Cln3Q61124 Fbl-201ENSMUST00000042405 1197 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
Cln3Q61124 Grb2-202ENSMUST00000106495 2041 ntTSL 5 BASIC26.56■■□□□ 1.84
Cln3Q61124 Ppp1r3e-202ENSMUST00000177403 1957 ntAPPRIS P1 TSL 5 BASIC26.55■■□□□ 1.84
Cln3Q61124 Thap8-202ENSMUST00000108187 1184 ntAPPRIS P5 TSL 2 BASIC26.55■■□□□ 1.84
Cln3Q61124 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC26.55■■□□□ 1.84
Cln3Q61124 Srarp-201ENSMUST00000094544 905 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Cln3Q61124 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
Cln3Q61124 Kdf1-202ENSMUST00000105901 1699 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
Cln3Q61124 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
Cln3Q61124 AC125444.1-201ENSMUST00000223536 639 ntAPPRIS P1 BASIC26.53■■□□□ 1.84
Cln3Q61124 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
Cln3Q61124 Tbr1-202ENSMUST00000102737 1406 ntTSL 2 BASIC26.51■■□□□ 1.83
Cln3Q61124 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC26.51■■□□□ 1.83
Cln3Q61124 Gm9905-201ENSMUST00000065740 1845 ntBASIC26.51■■□□□ 1.83
Cln3Q61124 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC26.5■■□□□ 1.83
Cln3Q61124 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
Cln3Q61124 Gm9806-201ENSMUST00000051080 552 ntBASIC26.5■■□□□ 1.83
Cln3Q61124 Gm4799-201ENSMUST00000095396 657 ntBASIC26.5■■□□□ 1.83
Cln3Q61124 AC153504.1-201ENSMUST00000218379 2290 ntBASIC26.48■■□□□ 1.83
Cln3Q61124 Pkd1-207ENSMUST00000228550 1050 ntBASIC26.48■■□□□ 1.83
Cln3Q61124 Gm16437-201ENSMUST00000025669 507 ntBASIC26.48■■□□□ 1.83
Cln3Q61124 Gadd45a-201ENSMUST00000043098 1223 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
Cln3Q61124 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
Cln3Q61124 2410017I17Rik-201ENSMUST00000056774 1509 ntTSL 5 BASIC26.48■■□□□ 1.83
Cln3Q61124 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
Cln3Q61124 Zxda-201ENSMUST00000117281 2621 ntBASIC26.47■■□□□ 1.83
Cln3Q61124 E030037K01Rik-201ENSMUST00000180928 1756 ntBASIC26.46■■□□□ 1.83
Cln3Q61124 Gm11687-201ENSMUST00000118911 886 ntBASIC26.46■■□□□ 1.83
Cln3Q61124 Gm37136-201ENSMUST00000194368 194 ntBASIC26.46■■□□□ 1.83
Cln3Q61124 Gm44957-202ENSMUST00000205137 448 ntTSL 3 BASIC26.46■■□□□ 1.83
Cln3Q61124 Gm45364-201ENSMUST00000210883 159 ntBASIC26.46■■□□□ 1.83
Cln3Q61124 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
Cln3Q61124 Mir3960-201ENSMUST00000198213 73 ntBASIC26.45■■□□□ 1.82
Cln3Q61124 Stbd1-202ENSMUST00000200941 523 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
Cln3Q61124 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC26.45■■□□□ 1.82
Cln3Q61124 Slc30a2-203ENSMUST00000105873 1224 ntTSL 5 BASIC26.44■■□□□ 1.82
Cln3Q61124 AC154454.1-201ENSMUST00000225253 216 ntBASIC26.44■■□□□ 1.82
Cln3Q61124 Crct1-201ENSMUST00000029521 718 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
Cln3Q61124 Rarres1-201ENSMUST00000054825 1325 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Cln3Q61124 Gm15918-201ENSMUST00000137259 689 ntTSL 3 BASIC26.43■■□□□ 1.82
Cln3Q61124 A930035D04Rik-201ENSMUST00000064013 543 ntBASIC26.43■■□□□ 1.82
Cln3Q61124 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
Cln3Q61124 Rps2-ps13-201ENSMUST00000117295 882 ntBASIC26.42■■□□□ 1.82
Cln3Q61124 Gm12366-201ENSMUST00000121722 873 ntBASIC26.42■■□□□ 1.82
Cln3Q61124 Rps2-206ENSMUST00000146867 962 ntTSL 5 BASIC26.42■■□□□ 1.82
Cln3Q61124 Cox4i1-205ENSMUST00000181586 765 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Cln3Q61124 Smagp-201ENSMUST00000066068 1132 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Cln3Q61124 Rps2-ps10-201ENSMUST00000076842 879 ntBASIC26.42■■□□□ 1.82
Cln3Q61124 Gm5786-201ENSMUST00000085368 882 ntBASIC26.42■■□□□ 1.82
Cln3Q61124 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
Cln3Q61124 3110021N24Rik-201ENSMUST00000178992 1812 ntAPPRIS P1 TSL 5 BASIC26.42■■□□□ 1.82
Cln3Q61124 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
Cln3Q61124 Klhl15-202ENSMUST00000113908 1235 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
Cln3Q61124 Lrfn1-203ENSMUST00000189877 1852 ntAPPRIS P3 TSL 5 BASIC26.4■■□□□ 1.82
Cln3Q61124 Crlf2-201ENSMUST00000044579 1323 ntAPPRIS P3 TSL 1 (best) BASIC26.39■■□□□ 1.82
Cln3Q61124 Gm16049-201ENSMUST00000155166 616 ntTSL 3 BASIC26.39■■□□□ 1.82
Cln3Q61124 1700020L24Rik-201ENSMUST00000037378 949 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
Cln3Q61124 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC26.39■■□□□ 1.81
Cln3Q61124 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC26.38■■□□□ 1.81
Cln3Q61124 Mpped1-208ENSMUST00000163723 1064 ntTSL 5 BASIC26.38■■□□□ 1.81
Cln3Q61124 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Cln3Q61124 Mrpl23-201ENSMUST00000038675 692 ntAPPRIS P2 TSL 1 (best) BASIC26.38■■□□□ 1.81
Cln3Q61124 Rab4b-201ENSMUST00000093040 1192 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
Cln3Q61124 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Cln3Q61124 Gm45051-201ENSMUST00000206838 963 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
Cln3Q61124 4921531C22Rik-201ENSMUST00000150145 1905 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
Cln3Q61124 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Cln3Q61124 Tlx2-202ENSMUST00000174674 1514 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
Cln3Q61124 Tmeff1-201ENSMUST00000030032 2461 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
Cln3Q61124 Ctbp1-201ENSMUST00000079746 2279 ntAPPRIS P3 TSL 1 (best) BASIC26.32■■□□□ 1.8
Cln3Q61124 Serpinb6a-206ENSMUST00000167163 1654 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
Cln3Q61124 Gm27502-201ENSMUST00000183495 199 ntBASIC26.31■■□□□ 1.8
Cln3Q61124 Ndufs3-201ENSMUST00000005647 1046 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
Cln3Q61124 Gm20512-201ENSMUST00000172483 618 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Cln3Q61124 AC153366.1-201ENSMUST00000218132 1056 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
Cln3Q61124 Tceal6-201ENSMUST00000033783 1114 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Cln3Q61124 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC26.3■■□□□ 1.8
Cln3Q61124 Gm13889-201ENSMUST00000099689 1386 ntBASIC26.3■■□□□ 1.8
Cln3Q61124 Mpp6-202ENSMUST00000036236 2161 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
Cln3Q61124 Cetn4-201ENSMUST00000071400 1808 ntTSL 5 BASIC26.3■■□□□ 1.8
Cln3Q61124 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC26.29■■□□□ 1.8
Cln3Q61124 Fra10ac1-201ENSMUST00000067167 1402 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
Cln3Q61124 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
Cln3Q61124 Gm43573-201ENSMUST00000196445 570 ntTSL 5 BASIC26.28■■□□□ 1.8
Cln3Q61124 Pde6d-201ENSMUST00000027444 1159 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Cln3Q61124 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Cln3Q61124 Hibadh-201ENSMUST00000031788 1825 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
Cln3Q61124 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
Cln3Q61124 Ppa2-203ENSMUST00000122334 1368 ntAPPRIS ALT2 TSL 1 (best) BASIC26.27■■□□□ 1.8
Cln3Q61124 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC26.27■■□□□ 1.8
Cln3Q61124 Gm43445-201ENSMUST00000198564 2091 ntBASIC26.26■■□□□ 1.79
Cln3Q61124 Micu3-201ENSMUST00000068999 2219 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
Cln3Q61124 Klhl15-203ENSMUST00000113911 1227 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
Cln3Q61124 Azin2-202ENSMUST00000106068 2049 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
Cln3Q61124 Gm12818-201ENSMUST00000117562 1349 ntBASIC26.24■■□□□ 1.79
Cln3Q61124 Nt5c3-201ENSMUST00000031793 1676 ntAPPRIS P3 TSL 1 (best) BASIC26.23■■□□□ 1.79
Cln3Q61124 Phox2a-201ENSMUST00000008090 1609 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
Cln3Q61124 Fam149b-201ENSMUST00000037698 924 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
Retrieved 100 of 76,532 protein–RNA pairs in 27.3 ms