Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CTCFP49711 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC30.34■■■□□ 2.45
CTCFP49711 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC30.34■■■□□ 2.45
CTCFP49711 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC30.32■■■□□ 2.44
CTCFP49711 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC30.32■■■□□ 2.44
CTCFP49711 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CTCFP49711 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
CTCFP49711 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC30.29■■■□□ 2.44
CTCFP49711 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC30.29■■■□□ 2.44
CTCFP49711 DUX4L18-201ENST00000553347 1267 ntBASIC30.29■■■□□ 2.44
CTCFP49711 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
CTCFP49711 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC30.28■■■□□ 2.44
CTCFP49711 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC30.28■■■□□ 2.44
CTCFP49711 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
CTCFP49711 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
CTCFP49711 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC30.26■■■□□ 2.44
CTCFP49711 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC30.26■■■□□ 2.43
CTCFP49711 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
CTCFP49711 AC129492.7-201ENST00000622992 756 ntBASIC30.26■■■□□ 2.43
CTCFP49711 HES6-204ENST00000409182 863 ntTSL 2 BASIC30.25■■■□□ 2.43
CTCFP49711 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC30.25■■■□□ 2.43
CTCFP49711 LINC00273-201ENST00000539813 1452 ntBASIC30.25■■■□□ 2.43
CTCFP49711 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CTCFP49711 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC30.24■■■□□ 2.43
CTCFP49711 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC30.24■■■□□ 2.43
CTCFP49711 GPI-201ENST00000356487 2210 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
CTCFP49711 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
CTCFP49711 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC30.23■■■□□ 2.43
CTCFP49711 AC009299.2-201ENST00000482477 511 ntBASIC30.23■■■□□ 2.43
CTCFP49711 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
CTCFP49711 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC30.22■■■□□ 2.43
CTCFP49711 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
CTCFP49711 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC30.22■■■□□ 2.43
CTCFP49711 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC30.22■■■□□ 2.43
CTCFP49711 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CTCFP49711 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
CTCFP49711 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
CTCFP49711 CHST11-203ENST00000547956 936 ntTSL 2 BASIC30.21■■■□□ 2.43
CTCFP49711 AC092296.2-201ENST00000589470 999 ntBASIC30.21■■■□□ 2.43
CTCFP49711 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC30.2■■■□□ 2.43
CTCFP49711 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
CTCFP49711 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC30.19■■■□□ 2.42
CTCFP49711 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC30.19■■■□□ 2.42
CTCFP49711 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC30.19■■■□□ 2.42
CTCFP49711 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC30.19■■■□□ 2.42
CTCFP49711 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
CTCFP49711 GUSBP5-201ENST00000418136 578 ntBASIC30.17■■■□□ 2.42
CTCFP49711 ECEL1P2-201ENST00000461596 1295 ntBASIC30.17■■■□□ 2.42
CTCFP49711 AC025884.2-201ENST00000553429 711 ntBASIC30.17■■■□□ 2.42
CTCFP49711 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC30.17■■■□□ 2.42
CTCFP49711 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
CTCFP49711 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC30.16■■■□□ 2.42
CTCFP49711 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC30.16■■■□□ 2.42
CTCFP49711 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC30.16■■■□□ 2.42
CTCFP49711 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
CTCFP49711 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC30.15■■■□□ 2.42
CTCFP49711 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
CTCFP49711 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
CTCFP49711 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC30.14■■■□□ 2.42
CTCFP49711 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC30.14■■■□□ 2.42
CTCFP49711 CTDNEP1-208ENST00000573600 1724 ntAPPRIS P1 TSL 5 BASIC30.13■■■□□ 2.41
CTCFP49711 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
CTCFP49711 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
CTCFP49711 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC30.12■■■□□ 2.41
CTCFP49711 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC30.12■■■□□ 2.41
CTCFP49711 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC30.12■■■□□ 2.41
CTCFP49711 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC30.11■■■□□ 2.41
CTCFP49711 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
CTCFP49711 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC30.11■■■□□ 2.41
CTCFP49711 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC30.11■■■□□ 2.41
CTCFP49711 GNG10-201ENST00000374293 1491 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
CTCFP49711 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
CTCFP49711 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CTCFP49711 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CTCFP49711 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC30.1■■■□□ 2.41
CTCFP49711 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
CTCFP49711 ADRA1D-201ENST00000379453 2728 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
CTCFP49711 RP9P-202ENST00000450133 1212 ntBASIC30.09■■■□□ 2.41
CTCFP49711 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
CTCFP49711 AGAP1-204ENST00000409457 2165 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
CTCFP49711 OR2A1-AS1-204ENST00000470435 602 ntBASIC30.08■■■□□ 2.41
CTCFP49711 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC30.08■■■□□ 2.41
CTCFP49711 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC30.07■■■□□ 2.4
CTCFP49711 SULT4A1-201ENST00000330884 2468 ntAPPRIS P1 TSL 1 (best) BASIC30.06■■■□□ 2.4
CTCFP49711 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC30.06■■■□□ 2.4
CTCFP49711 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC30.06■■■□□ 2.4
CTCFP49711 GNPTAB-206ENST00000549940 1678 ntTSL 1 (best) BASIC30.05■■■□□ 2.4
CTCFP49711 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
CTCFP49711 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC30.03■■■□□ 2.4
CTCFP49711 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC30.03■■■□□ 2.4
CTCFP49711 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC30.03■■■□□ 2.4
CTCFP49711 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC30.03■■■□□ 2.4
CTCFP49711 AL592293.1-201ENST00000502889 1188 ntBASIC30.02■■■□□ 2.4
CTCFP49711 LSM7-203ENST00000585409 512 ntTSL 2 BASIC30.02■■■□□ 2.4
CTCFP49711 KRT8P33-201ENST00000508125 1423 ntBASIC30.02■■■□□ 2.4
CTCFP49711 AL356441.2-201ENST00000443009 864 ntBASIC30.01■■■□□ 2.39
CTCFP49711 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC30.01■■■□□ 2.39
CTCFP49711 AC148477.6-201ENST00000623746 465 ntBASIC30.01■■■□□ 2.39
CTCFP49711 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
CTCFP49711 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC30■■■□□ 2.39
Retrieved 100 of 98,524 protein–RNA pairs in 672 ms