Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDX1P47902 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDX1P47902 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDX1P47902 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDX1P47902 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CDX1P47902 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC20.58■□□□□ 0.88
CDX1P47902 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CDX1P47902 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDX1P47902 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDX1P47902 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDX1P47902 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
CDX1P47902 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC20.56■□□□□ 0.88
CDX1P47902 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDX1P47902 ABHD17AP4-201ENST00000411545 909 ntBASIC20.56■□□□□ 0.88
CDX1P47902 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC20.56■□□□□ 0.88
CDX1P47902 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDX1P47902 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CDX1P47902 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDX1P47902 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC20.55■□□□□ 0.88
CDX1P47902 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDX1P47902 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDX1P47902 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CDX1P47902 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDX1P47902 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDX1P47902 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CDX1P47902 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC20.54■□□□□ 0.88
CDX1P47902 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDX1P47902 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC20.53■□□□□ 0.88
CDX1P47902 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC20.53■□□□□ 0.88
CDX1P47902 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC20.53■□□□□ 0.88
CDX1P47902 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC20.53■□□□□ 0.88
CDX1P47902 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
CDX1P47902 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC20.53■□□□□ 0.88
CDX1P47902 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
CDX1P47902 ARMC10-202ENST00000323716 2635 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CDX1P47902 ACTR3B-201ENST00000256001 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDX1P47902 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDX1P47902 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC20.52■□□□□ 0.88
CDX1P47902 CIB2-204ENST00000557846 934 ntTSL 3 BASIC20.52■□□□□ 0.88
CDX1P47902 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
CDX1P47902 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
CDX1P47902 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC20.52■□□□□ 0.88
CDX1P47902 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
CDX1P47902 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
CDX1P47902 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.87
CDX1P47902 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
CDX1P47902 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
CDX1P47902 DUX4L29-201ENST00000425409 679 ntBASIC20.51■□□□□ 0.87
CDX1P47902 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC20.51■□□□□ 0.87
CDX1P47902 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
CDX1P47902 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDX1P47902 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
CDX1P47902 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC20.5■□□□□ 0.87
CDX1P47902 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC20.5■□□□□ 0.87
CDX1P47902 GPR75-ASB3-201ENST00000406625 2113 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
CDX1P47902 MIR6090-201ENST00000622481 60 ntBASIC20.49■□□□□ 0.87
CDX1P47902 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDX1P47902 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDX1P47902 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
CDX1P47902 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC20.48■□□□□ 0.87
CDX1P47902 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC20.48■□□□□ 0.87
CDX1P47902 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDX1P47902 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDX1P47902 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CDX1P47902 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC20.48■□□□□ 0.87
CDX1P47902 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CDX1P47902 SMARCD3-203ENST00000392811 2018 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
CDX1P47902 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
CDX1P47902 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
CDX1P47902 HGH1-207ENST00000628266 258 ntTSL 5 BASIC20.47■□□□□ 0.87
CDX1P47902 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
CDX1P47902 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
CDX1P47902 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
CDX1P47902 LTK-203ENST00000453182 2412 ntTSL 2 BASIC20.46■□□□□ 0.87
CDX1P47902 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
CDX1P47902 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
CDX1P47902 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC20.46■□□□□ 0.87
CDX1P47902 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
CDX1P47902 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDX1P47902 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
CDX1P47902 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
CDX1P47902 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC20.45■□□□□ 0.86
CDX1P47902 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
CDX1P47902 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
CDX1P47902 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC20.44■□□□□ 0.86
CDX1P47902 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDX1P47902 POLR1D-201ENST00000302979 1166 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
CDX1P47902 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC20.44■□□□□ 0.86
CDX1P47902 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
CDX1P47902 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
CDX1P47902 KLC2-205ENST00000394078 1557 ntTSL 5 BASIC20.43■□□□□ 0.86
CDX1P47902 ZNRF2P2-203ENST00000454624 420 ntBASIC20.43■□□□□ 0.86
CDX1P47902 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDX1P47902 MIR7108-201ENST00000614319 87 ntBASIC20.43■□□□□ 0.86
CDX1P47902 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
CDX1P47902 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
CDX1P47902 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC20.43■□□□□ 0.86
CDX1P47902 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC20.42■□□□□ 0.86
CDX1P47902 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
CDX1P47902 AC021231.2-201ENST00000594613 730 ntBASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 84.9 ms