Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
NKX2-1P43699 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NKX2-1P43699 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
NKX2-1P43699 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
NKX2-1P43699 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NKX2-1P43699 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
NKX2-1P43699 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NKX2-1P43699 H2AFV-202ENST00000308153 752 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
NKX2-1P43699 FAM58A-202ENST00000440428 1164 ntAPPRIS P2 TSL 2 BASIC20.87■□□□□ 0.93
NKX2-1P43699 PQLC1-211ENST00000590381 1247 ntTSL 2 BASIC20.87■□□□□ 0.93
NKX2-1P43699 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NKX2-1P43699 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NKX2-1P43699 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC20.86■□□□□ 0.93
NKX2-1P43699 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC20.86■□□□□ 0.93
NKX2-1P43699 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
NKX2-1P43699 LINC01003-201ENST00000564834 1764 ntBASIC20.86■□□□□ 0.93
NKX2-1P43699 FAM78B-202ENST00000354422 1475 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
NKX2-1P43699 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
NKX2-1P43699 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC20.85■□□□□ 0.93
NKX2-1P43699 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
NKX2-1P43699 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC20.84■□□□□ 0.93
NKX2-1P43699 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC20.84■□□□□ 0.93
NKX2-1P43699 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
NKX2-1P43699 TP53I13-201ENST00000301057 1530 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
NKX2-1P43699 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NKX2-1P43699 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
NKX2-1P43699 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC20.83■□□□□ 0.93
NKX2-1P43699 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
NKX2-1P43699 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
NKX2-1P43699 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC20.83■□□□□ 0.93
NKX2-1P43699 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC20.83■□□□□ 0.92
NKX2-1P43699 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
NKX2-1P43699 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.82■□□□□ 0.92
NKX2-1P43699 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.82■□□□□ 0.92
NKX2-1P43699 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC20.82■□□□□ 0.92
NKX2-1P43699 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
NKX2-1P43699 TNFRSF25-205ENST00000377782 1632 ntAPPRIS P4 TSL 1 (best) BASIC20.82■□□□□ 0.92
NKX2-1P43699 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC20.81■□□□□ 0.92
NKX2-1P43699 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NKX2-1P43699 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC20.81■□□□□ 0.92
NKX2-1P43699 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
NKX2-1P43699 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC20.81■□□□□ 0.92
NKX2-1P43699 AL449106.1-201ENST00000608517 1980 ntBASIC20.81■□□□□ 0.92
NKX2-1P43699 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC20.8■□□□□ 0.92
NKX2-1P43699 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
NKX2-1P43699 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
NKX2-1P43699 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.79■□□□□ 0.92
NKX2-1P43699 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
NKX2-1P43699 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC20.79■□□□□ 0.92
NKX2-1P43699 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
NKX2-1P43699 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC20.79■□□□□ 0.92
NKX2-1P43699 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC20.78■□□□□ 0.92
NKX2-1P43699 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC20.78■□□□□ 0.92
NKX2-1P43699 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.78■□□□□ 0.92
NKX2-1P43699 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
NKX2-1P43699 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
NKX2-1P43699 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC20.77■□□□□ 0.91
NKX2-1P43699 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NKX2-1P43699 UBE2L6-201ENST00000287156 1354 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NKX2-1P43699 ANAPC11-203ENST00000392376 687 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NKX2-1P43699 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NKX2-1P43699 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
NKX2-1P43699 ARTN-211ENST00000498139 1303 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
NKX2-1P43699 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NKX2-1P43699 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
NKX2-1P43699 AL133380.1-201ENST00000506013 324 ntBASIC20.74■□□□□ 0.91
NKX2-1P43699 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
NKX2-1P43699 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC20.74■□□□□ 0.91
NKX2-1P43699 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NKX2-1P43699 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NKX2-1P43699 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NKX2-1P43699 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
NKX2-1P43699 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC20.72■□□□□ 0.91
NKX2-1P43699 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
NKX2-1P43699 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC20.71■□□□□ 0.91
NKX2-1P43699 AL355297.4-201ENST00000603191 1249 ntTSL 3 BASIC20.71■□□□□ 0.91
NKX2-1P43699 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
NKX2-1P43699 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
NKX2-1P43699 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.91
NKX2-1P43699 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX2-1P43699 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX2-1P43699 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX2-1P43699 MBD2-202ENST00000398398 1237 ntTSL 2 BASIC20.7■□□□□ 0.9
NKX2-1P43699 SIGMAR1-205ENST00000477726 840 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NKX2-1P43699 MBD2-205ENST00000583046 1182 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
NKX2-1P43699 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
NKX2-1P43699 CCND3-202ENST00000372988 2133 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
NKX2-1P43699 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
NKX2-1P43699 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
NKX2-1P43699 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
NKX2-1P43699 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
NKX2-1P43699 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
NKX2-1P43699 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
NKX2-1P43699 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
NKX2-1P43699 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC20.67■□□□□ 0.9
NKX2-1P43699 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC20.67■□□□□ 0.9
NKX2-1P43699 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC20.67■□□□□ 0.9
NKX2-1P43699 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC20.67■□□□□ 0.9
NKX2-1P43699 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC20.67■□□□□ 0.9
NKX2-1P43699 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms