Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 YMR206WYMR206W 942 nt7.28□□□□□ -1.24
CUP9P41817 RPS6AYPL090C 711 nt7.28□□□□□ -1.24
CUP9P41817 RPS6BYBR181C 711 nt7.28□□□□□ -1.24
CUP9P41817 LEU4YNL104C 1860 nt7.28□□□□□ -1.24
CUP9P41817 YPT31YER031C 672 nt7.27□□□□□ -1.25
CUP9P41817 YJR149WYJR149W 1215 nt7.27□□□□□ -1.25
CUP9P41817 RNA170RNA170 169 nt7.27□□□□□ -1.25
CUP9P41817 BXI1YNL305C 894 nt7.27□□□□□ -1.25
CUP9P41817 YDR467CYDR467C 327 nt7.26□□□□□ -1.25
CUP9P41817 TDH1YJL052W 999 nt7.25□□□□□ -1.25
CUP9P41817 KAE1YKR038C 1161 nt7.25□□□□□ -1.25
CUP9P41817 ADE1YAR015W 921 nt7.25□□□□□ -1.25
CUP9P41817 ATP2YJR121W 1536 nt7.25□□□□□ -1.25
CUP9P41817 TMS1YDR105C 1422 nt7.25□□□□□ -1.25
CUP9P41817 GAL2YLR081W 1725 nt7.24□□□□□ -1.25
CUP9P41817 TOS1YBR162C 1368 nt7.24□□□□□ -1.25
CUP9P41817 AAC3YBR085W 924 nt7.24□□□□□ -1.25
CUP9P41817 FUS3YBL016W 1062 nt7.23□□□□□ -1.25
CUP9P41817 YIL177CYIL177C 5277 nt7.22□□□□□ -1.25
CUP9P41817 NUP53YMR153W 1428 nt7.22□□□□□ -1.25
CUP9P41817 BUB2YMR055C 921 nt7.22□□□□□ -1.25
CUP9P41817 TOK1YJL093C 2076 nt7.22□□□□□ -1.25
CUP9P41817 INH1YDL181W 258 nt7.21□□□□□ -1.26
CUP9P41817 tE(CUC)DtE(CUC)D 72 nt7.21□□□□□ -1.26
CUP9P41817 tE(CUC)ItE(CUC)I 72 nt7.21□□□□□ -1.26
CUP9P41817 YJL043WYJL043W 774 nt7.21□□□□□ -1.26
CUP9P41817 RHO1YPR165W 630 nt7.21□□□□□ -1.26
CUP9P41817 PET494YNR045W 1470 nt7.2□□□□□ -1.26
CUP9P41817 YBL095WYBL095W 813 nt7.2□□□□□ -1.26
CUP9P41817 NBA1YOL070C 1506 nt7.19□□□□□ -1.26
CUP9P41817 HOG1YLR113W 1308 nt7.19□□□□□ -1.26
CUP9P41817 NPP2YEL016C 1482 nt7.18□□□□□ -1.26
CUP9P41817 YMC2YBR104W 990 nt7.18□□□□□ -1.26
CUP9P41817 PMU1YKL128C 888 nt7.17□□□□□ -1.26
CUP9P41817 MRS4YKR052C 915 nt7.17□□□□□ -1.26
CUP9P41817 PRE5YMR314W 705 nt7.17□□□□□ -1.26
CUP9P41817 BAP3YDR046C 1815 nt7.17□□□□□ -1.26
CUP9P41817 HXK1YFR053C 1458 nt7.17□□□□□ -1.26
CUP9P41817 THI73YLR004C 1572 nt7.16□□□□□ -1.26
CUP9P41817 PUP3YER094C 618 nt7.16□□□□□ -1.26
CUP9P41817 YJL009WYJL009W 327 nt7.16□□□□□ -1.26
CUP9P41817 HEM14YER014W 1620 nt7.16□□□□□ -1.26
CUP9P41817 FET5YFL041W 1869 nt7.15□□□□□ -1.26
CUP9P41817 YDR476CYDR476C 675 nt7.15□□□□□ -1.26
CUP9P41817 YIL168WYIL168W 384 nt7.14□□□□□ -1.27
CUP9P41817 YBR056WYBR056W 1506 nt7.13□□□□□ -1.27
CUP9P41817 SDH8YBR269C 417 nt7.13□□□□□ -1.27
CUP9P41817 PRE10YOR362C 867 nt7.12□□□□□ -1.27
CUP9P41817 TPN1YGL186C 1740 nt7.12□□□□□ -1.27
CUP9P41817 TIM50YPL063W 1431 nt7.11□□□□□ -1.27
CUP9P41817 PSP2YML017W 1782 nt7.11□□□□□ -1.27
CUP9P41817 ALD5YER073W 1563 nt7.11□□□□□ -1.27
CUP9P41817 SHC1YER096W 1539 nt7.1□□□□□ -1.27
CUP9P41817 JHD1YER051W 1479 nt7.1□□□□□ -1.27
CUP9P41817 MTO1YGL236C 2010 nt7.09□□□□□ -1.27
CUP9P41817 TRP2YER090W 1524 nt7.06□□□□□ -1.28
CUP9P41817 RRT6YGL146C 936 nt7.06□□□□□ -1.28
CUP9P41817 YHL030W-AYHL030W-A 462 nt7.06□□□□□ -1.28
CUP9P41817 CPT1YNL130C 1182 nt7.06□□□□□ -1.28
CUP9P41817 YPL247CYPL247C 1572 nt7.06□□□□□ -1.28
CUP9P41817 AAT1YKL106W 1356 nt7.06□□□□□ -1.28
CUP9P41817 THI6YPL214C 1623 nt7.05□□□□□ -1.28
CUP9P41817 HXT11YOL156W 1704 nt7.05□□□□□ -1.28
CUP9P41817 HAC1YFL031W 717 nt7.05□□□□□ -1.28
CUP9P41817 RCF1YML030W 480 nt7.05□□□□□ -1.28
CUP9P41817 EHT1YBR177C 1356 nt7.05□□□□□ -1.28
CUP9P41817 MEP1YGR121C 1479 nt7.04□□□□□ -1.28
CUP9P41817 snR86snR86 1004 nt7.04□□□□□ -1.28
CUP9P41817 tD(GUC)BtD(GUC)B 72 nt7.04□□□□□ -1.28
CUP9P41817 tD(GUC)DtD(GUC)D 72 nt7.04□□□□□ -1.28
CUP9P41817 tD(GUC)G1tD(GUC)G1 72 nt7.04□□□□□ -1.28
CUP9P41817 tD(GUC)G2tD(GUC)G2 72 nt7.04□□□□□ -1.28
CUP9P41817 tD(GUC)I1tD(GUC)I1 72 nt7.04□□□□□ -1.28
CUP9P41817 tD(GUC)I2tD(GUC)I2 72 nt7.04□□□□□ -1.28
CUP9P41817 tD(GUC)J1tD(GUC)J1 72 nt7.04□□□□□ -1.28
CUP9P41817 tD(GUC)J2tD(GUC)J2 72 nt7.04□□□□□ -1.28
CUP9P41817 tD(GUC)J3tD(GUC)J3 72 nt7.04□□□□□ -1.28
CUP9P41817 tD(GUC)J4tD(GUC)J4 72 nt7.04□□□□□ -1.28
CUP9P41817 tD(GUC)KtD(GUC)K 72 nt7.04□□□□□ -1.28
CUP9P41817 tD(GUC)L1tD(GUC)L1 72 nt7.04□□□□□ -1.28
CUP9P41817 tD(GUC)L2tD(GUC)L2 72 nt7.04□□□□□ -1.28
CUP9P41817 tD(GUC)MtD(GUC)M 72 nt7.04□□□□□ -1.28
CUP9P41817 tD(GUC)OtD(GUC)O 72 nt7.04□□□□□ -1.28
CUP9P41817 SPR1YOR190W 1338 nt7.02□□□□□ -1.28
CUP9P41817 YLR072WYLR072W 2082 nt7.02□□□□□ -1.29
CUP9P41817 HXT8YJL214W 1710 nt7.02□□□□□ -1.29
CUP9P41817 YLR358CYLR358C 564 nt7.02□□□□□ -1.29
CUP9P41817 YOR072WYOR072W 315 nt7.02□□□□□ -1.29
CUP9P41817 LRO1YNR008W 1986 nt7.02□□□□□ -1.29
CUP9P41817 PNS1YOR161C 1620 nt7.01□□□□□ -1.29
CUP9P41817 RPR1RPR1 369 nt7□□□□□ -1.29
CUP9P41817 MIM1YOL026C 342 nt6.99□□□□□ -1.29
CUP9P41817 SRM1YGL097W 1449 nt6.99□□□□□ -1.29
CUP9P41817 HBS1YKR084C 1836 nt6.99□□□□□ -1.29
CUP9P41817 ARG7YMR062C 1326 nt6.99□□□□□ -1.29
CUP9P41817 YGR137WYGR137W 375 nt6.98□□□□□ -1.29
CUP9P41817 APT1YML022W 564 nt6.97□□□□□ -1.29
CUP9P41817 WSC3YOL105C 1671 nt6.96□□□□□ -1.29
CUP9P41817 FRA1YLL029W 2250 nt6.96□□□□□ -1.3
CUP9P41817 NDE2YDL085W 1638 nt6.95□□□□□ -1.3
Retrieved 100 of 7,029 protein–RNA pairs in 16.4 ms