Protein–RNA interactions for Protein: P40224

Cxcl12, Stromal cell-derived factor 1, mousemouse

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cxcl12P40224 Nsmce4a-202ENSMUST00000160289 1435 ntAPPRIS P1 TSL 1 (best) BASIC25.12■■□□□ 1.61
Cxcl12P40224 Ppp2r3d-202ENSMUST00000180270 450 ntTSL 1 (best) BASIC25.11■■□□□ 1.61
Cxcl12P40224 Tmem98-201ENSMUST00000040865 1633 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
Cxcl12P40224 Cited4-201ENSMUST00000094814 1249 ntAPPRIS P1 BASIC25.1■■□□□ 1.61
Cxcl12P40224 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC25.1■■□□□ 1.61
Cxcl12P40224 Ywhah-201ENSMUST00000019109 1764 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Cxcl12P40224 Emc8-208ENSMUST00000181950 747 ntTSL 2 BASIC25.09■■□□□ 1.61
Cxcl12P40224 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
Cxcl12P40224 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
Cxcl12P40224 Cited1-202ENSMUST00000101336 1090 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Cxcl12P40224 Gm45364-201ENSMUST00000210883 159 ntBASIC25.08■■□□□ 1.61
Cxcl12P40224 Trappc6b-201ENSMUST00000021380 1255 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
Cxcl12P40224 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
Cxcl12P40224 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
Cxcl12P40224 Dapk3-201ENSMUST00000047665 1676 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
Cxcl12P40224 Gm9888-201ENSMUST00000150678 965 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
Cxcl12P40224 Ttc19-202ENSMUST00000101075 2193 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
Cxcl12P40224 Psmg1-201ENSMUST00000023630 1044 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
Cxcl12P40224 Faim-202ENSMUST00000112911 803 ntAPPRIS ALT1 TSL 2 BASIC25.04■■□□□ 1.6
Cxcl12P40224 Gm22567-201ENSMUST00000175542 342 ntBASIC25.04■■□□□ 1.6
Cxcl12P40224 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
Cxcl12P40224 Hscb-201ENSMUST00000056937 804 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Cxcl12P40224 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
Cxcl12P40224 Tmem55b-201ENSMUST00000049312 1594 ntAPPRIS ALT1 TSL 1 (best) BASIC25.02■■□□□ 1.6
Cxcl12P40224 Hoxa13-203ENSMUST00000147595 2395 ntAPPRIS P5 TSL 5 BASIC25.02■■□□□ 1.6
Cxcl12P40224 Gm14523-201ENSMUST00000117260 558 ntBASIC25.02■■□□□ 1.6
Cxcl12P40224 Krtap28-10-201ENSMUST00000188323 957 ntAPPRIS P1 BASIC25.02■■□□□ 1.6
Cxcl12P40224 Tspan33-201ENSMUST00000046750 1994 ntAPPRIS P3 TSL 1 (best) BASIC25.01■■□□□ 1.59
Cxcl12P40224 Fam89b-203ENSMUST00000161368 1160 ntTSL 1 (best) BASIC24.99■■□□□ 1.59
Cxcl12P40224 2510046G10Rik-202ENSMUST00000187458 1052 ntBASIC24.99■■□□□ 1.59
Cxcl12P40224 4930426D05Rik-204ENSMUST00000144487 1393 ntTSL 5 BASIC24.98■■□□□ 1.59
Cxcl12P40224 Fam120aos-201ENSMUST00000180775 1780 ntTSL 1 (best) BASIC24.98■■□□□ 1.59
Cxcl12P40224 Gm5067-201ENSMUST00000170449 1009 ntBASIC24.97■■□□□ 1.59
Cxcl12P40224 Gm5812-201ENSMUST00000061073 957 ntBASIC24.96■■□□□ 1.59
Cxcl12P40224 Pdlim4-201ENSMUST00000018755 1182 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Cxcl12P40224 Dusp22-201ENSMUST00000091672 1161 ntAPPRIS ALT2 TSL 1 (best) BASIC24.94■■□□□ 1.58
Cxcl12P40224 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC24.94■■□□□ 1.58
Cxcl12P40224 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC24.94■■□□□ 1.58
Cxcl12P40224 Slc50a1-201ENSMUST00000029565 1022 ntAPPRIS P1 TSL 1 (best) BASIC24.92■■□□□ 1.58
Cxcl12P40224 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC24.92■■□□□ 1.58
Cxcl12P40224 Gm13889-201ENSMUST00000099689 1386 ntBASIC24.92■■□□□ 1.58
Cxcl12P40224 Gm12818-201ENSMUST00000117562 1349 ntBASIC24.91■■□□□ 1.58
Cxcl12P40224 Kiss1-202ENSMUST00000178033 496 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Cxcl12P40224 Kiss1-201ENSMUST00000007433 779 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
Cxcl12P40224 Rab7-204ENSMUST00000113598 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
Cxcl12P40224 Fam117a-201ENSMUST00000037502 2317 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
Cxcl12P40224 Cox11-201ENSMUST00000020851 1224 ntAPPRIS P2 TSL 1 (best) BASIC24.9■■□□□ 1.58
Cxcl12P40224 Trappc6b-207ENSMUST00000218686 785 ntTSL 3 BASIC24.9■■□□□ 1.58
Cxcl12P40224 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC24.89■■□□□ 1.58
Cxcl12P40224 Sec24d-208ENSMUST00000200333 307 ntTSL 1 (best) BASIC24.89■■□□□ 1.58
Cxcl12P40224 Atp5j-201ENSMUST00000023608 809 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
Cxcl12P40224 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
Cxcl12P40224 Mtch1-201ENSMUST00000095427 1922 ntAPPRIS P3 TSL 1 (best) BASIC24.88■■□□□ 1.57
Cxcl12P40224 Tor1a-201ENSMUST00000028200 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Cxcl12P40224 Vamp4-206ENSMUST00000150040 901 ntAPPRIS P1 TSL 5 BASIC24.88■■□□□ 1.57
Cxcl12P40224 Gm37136-201ENSMUST00000194368 194 ntBASIC24.88■■□□□ 1.57
Cxcl12P40224 Pgls-201ENSMUST00000034264 893 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
Cxcl12P40224 A030014E15Rik-201ENSMUST00000223400 796 ntAPPRIS P1 BASIC24.87■■□□□ 1.57
Cxcl12P40224 Mapkapk5-201ENSMUST00000031410 2234 ntAPPRIS P2 TSL 1 (best) BASIC24.87■■□□□ 1.57
Cxcl12P40224 Hook1-202ENSMUST00000107083 1506 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Cxcl12P40224 Gm40983-202ENSMUST00000222598 1198 ntTSL 5 BASIC24.86■■□□□ 1.57
Cxcl12P40224 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC24.86■■□□□ 1.57
Cxcl12P40224 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
Cxcl12P40224 Dleu7-201ENSMUST00000063169 1314 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
Cxcl12P40224 Gm45716-202ENSMUST00000134929 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
Cxcl12P40224 Nudt6-204ENSMUST00000108118 935 ntTSL 5 BASIC24.84■■□□□ 1.57
Cxcl12P40224 Sft2d1-210ENSMUST00000154553 1049 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Cxcl12P40224 Nudt6-201ENSMUST00000052645 1155 ntAPPRIS ALT2 TSL 1 (best) BASIC24.84■■□□□ 1.57
Cxcl12P40224 A530095I07Rik-201ENSMUST00000070942 847 ntTSL 1 (best) BASIC24.84■■□□□ 1.57
Cxcl12P40224 Nudt6-202ENSMUST00000099130 1070 ntAPPRIS P3 TSL 1 (best) BASIC24.84■■□□□ 1.57
Cxcl12P40224 Arpc2-201ENSMUST00000006467 1404 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
Cxcl12P40224 Mlf2-202ENSMUST00000180095 1475 ntAPPRIS P1 TSL 1 (best) BASIC24.83■■□□□ 1.57
Cxcl12P40224 Smarcc1-203ENSMUST00000197480 1949 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
Cxcl12P40224 Ildr2-202ENSMUST00000192426 1238 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
Cxcl12P40224 Dennd1b-209ENSMUST00000200533 1853 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
Cxcl12P40224 Id3-201ENSMUST00000008016 1278 ntAPPRIS P1 TSL 1 (best) BASIC24.82■■□□□ 1.56
Cxcl12P40224 Btf3l4-203ENSMUST00000102741 1033 ntAPPRIS P1 TSL 1 (best) BASIC24.81■■□□□ 1.56
Cxcl12P40224 H2-Q5-202ENSMUST00000172979 998 ntAPPRIS P1 TSL 5 BASIC24.81■■□□□ 1.56
Cxcl12P40224 Gm5921-201ENSMUST00000075898 882 ntBASIC24.81■■□□□ 1.56
Cxcl12P40224 Gm9910-201ENSMUST00000195385 1550 ntBASIC24.8■■□□□ 1.56
Cxcl12P40224 4931440P22Rik-201ENSMUST00000099076 1786 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
Cxcl12P40224 Ppcs-201ENSMUST00000030385 1443 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Cxcl12P40224 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC24.8■■□□□ 1.56
Cxcl12P40224 Gm10420-201ENSMUST00000121713 882 ntBASIC24.8■■□□□ 1.56
Cxcl12P40224 Shox2-204ENSMUST00000162439 1081 ntTSL 1 (best) BASIC24.8■■□□□ 1.56
Cxcl12P40224 Cldn10-203ENSMUST00000100314 2128 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Cxcl12P40224 Bri3-201ENSMUST00000056578 955 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Cxcl12P40224 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC24.79■■□□□ 1.56
Cxcl12P40224 Prrx2-201ENSMUST00000041659 1441 ntAPPRIS P2 TSL 1 (best) BASIC24.78■■□□□ 1.56
Cxcl12P40224 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC24.78■■□□□ 1.56
Cxcl12P40224 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC24.78■■□□□ 1.56
Cxcl12P40224 Tmem170b-202ENSMUST00000221694 602 ntTSL 3 BASIC24.78■■□□□ 1.56
Cxcl12P40224 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Cxcl12P40224 Gm13256-201ENSMUST00000131297 520 ntTSL 3 BASIC24.77■■□□□ 1.56
Cxcl12P40224 Rab4a-202ENSMUST00000118535 1419 ntAPPRIS P1 TSL 1 (best) BASIC24.77■■□□□ 1.56
Cxcl12P40224 Rundc3a-204ENSMUST00000107105 1861 ntTSL 1 (best) BASIC24.77■■□□□ 1.56
Cxcl12P40224 Gm15546-201ENSMUST00000122095 826 ntBASIC24.76■■□□□ 1.55
Cxcl12P40224 Nnat-208ENSMUST00000173595 927 ntTSL 2 BASIC24.76■■□□□ 1.55
Cxcl12P40224 Rtn4r-201ENSMUST00000059589 1938 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
Cxcl12P40224 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC24.75■■□□□ 1.55
Retrieved 100 of 76,532 protein–RNA pairs in 38.4 ms