Protein–RNA interactions for Protein: P40084

RTR1, RNA polymerase II subunit B1 CTD phosphatase RTR1, yeastyeast

Predicted RBP Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RTR1P40084 EHT1YBR177C 1356 nt10.03□□□□□ -0.8
RTR1P40084 LRO1YNR008W 1986 nt10.03□□□□□ -0.8
RTR1P40084 MRP1YDR347W 966 nt10.03□□□□□ -0.8
RTR1P40084 YHL008CYHL008C 1884 nt10.03□□□□□ -0.8
RTR1P40084 YOR343CYOR343C 327 nt10.03□□□□□ -0.8
RTR1P40084 ATP2YJR121W 1536 nt10.02□□□□□ -0.8
RTR1P40084 HRA1HRA1 564 nt10.01□□□□□ -0.81
RTR1P40084 YMR206WYMR206W 942 nt10.01□□□□□ -0.81
RTR1P40084 GDH1YOR375C 1365 nt10□□□□□ -0.81
RTR1P40084 ELP4YPL101W 1371 nt9.99□□□□□ -0.81
RTR1P40084 HXT8YJL214W 1710 nt9.98□□□□□ -0.81
RTR1P40084 ABP1YCR088W 1779 nt9.98□□□□□ -0.81
RTR1P40084 SRM1YGL097W 1449 nt9.98□□□□□ -0.81
RTR1P40084 HIS3YOR202W 663 nt9.97□□□□□ -0.81
RTR1P40084 TAD2YJL035C 753 nt9.96□□□□□ -0.82
RTR1P40084 LEA1YPL213W 717 nt9.96□□□□□ -0.82
RTR1P40084 tL(UAA)B1tL(UAA)B1 84 nt9.95□□□□□ -0.82
RTR1P40084 tL(UAA)B2tL(UAA)B2 84 nt9.95□□□□□ -0.82
RTR1P40084 tL(UAA)DtL(UAA)D 84 nt9.95□□□□□ -0.82
RTR1P40084 SUP51tL(UAA)J 84 nt9.95□□□□□ -0.82
RTR1P40084 tL(UAA)KtL(UAA)K 84 nt9.95□□□□□ -0.82
RTR1P40084 tL(UAA)LtL(UAA)L 84 nt9.95□□□□□ -0.82
RTR1P40084 tL(UAA)NtL(UAA)N 84 nt9.95□□□□□ -0.82
RTR1P40084 JHD1YER051W 1479 nt9.95□□□□□ -0.82
RTR1P40084 INO1YJL153C 1602 nt9.94□□□□□ -0.82
RTR1P40084 TIM50YPL063W 1431 nt9.94□□□□□ -0.82
RTR1P40084 YHL030W-AYHL030W-A 462 nt9.94□□□□□ -0.82
RTR1P40084 YIL168WYIL168W 384 nt9.94□□□□□ -0.82
RTR1P40084 DIP5YPL265W 1827 nt9.93□□□□□ -0.82
RTR1P40084 BUD31YCR063W 474 nt9.93□□□□□ -0.82
RTR1P40084 TDH1YJL052W 999 nt9.93□□□□□ -0.82
RTR1P40084 RCF1YML030W 480 nt9.93□□□□□ -0.82
RTR1P40084 PRE10YOR362C 867 nt9.91□□□□□ -0.82
RTR1P40084 tD(GUC)BtD(GUC)B 72 nt9.9□□□□□ -0.82
RTR1P40084 tD(GUC)DtD(GUC)D 72 nt9.9□□□□□ -0.82
RTR1P40084 tD(GUC)G1tD(GUC)G1 72 nt9.9□□□□□ -0.82
RTR1P40084 tD(GUC)G2tD(GUC)G2 72 nt9.9□□□□□ -0.82
RTR1P40084 tD(GUC)I1tD(GUC)I1 72 nt9.9□□□□□ -0.82
RTR1P40084 tD(GUC)I2tD(GUC)I2 72 nt9.9□□□□□ -0.82
RTR1P40084 tD(GUC)J1tD(GUC)J1 72 nt9.9□□□□□ -0.82
RTR1P40084 tD(GUC)J2tD(GUC)J2 72 nt9.9□□□□□ -0.82
RTR1P40084 tD(GUC)J3tD(GUC)J3 72 nt9.9□□□□□ -0.82
RTR1P40084 tD(GUC)J4tD(GUC)J4 72 nt9.9□□□□□ -0.82
RTR1P40084 tD(GUC)KtD(GUC)K 72 nt9.9□□□□□ -0.82
RTR1P40084 tD(GUC)L1tD(GUC)L1 72 nt9.9□□□□□ -0.82
RTR1P40084 tD(GUC)L2tD(GUC)L2 72 nt9.9□□□□□ -0.82
RTR1P40084 tD(GUC)MtD(GUC)M 72 nt9.9□□□□□ -0.82
RTR1P40084 tD(GUC)OtD(GUC)O 72 nt9.9□□□□□ -0.82
RTR1P40084 YAL016C-AYAL016C-A 315 nt9.9□□□□□ -0.82
RTR1P40084 ADE1YAR015W 921 nt9.89□□□□□ -0.83
RTR1P40084 PMU1YKL128C 888 nt9.88□□□□□ -0.83
RTR1P40084 NDE2YDL085W 1638 nt9.88□□□□□ -0.83
RTR1P40084 RPL12BYDR418W 498 nt9.86□□□□□ -0.83
RTR1P40084 TOS1YBR162C 1368 nt9.86□□□□□ -0.83
RTR1P40084 FTH1YBR207W 1398 nt9.86□□□□□ -0.83
RTR1P40084 ARO3YDR035W 1113 nt9.84□□□□□ -0.83
RTR1P40084 GLY1YEL046C 1164 nt9.84□□□□□ -0.83
RTR1P40084 TDA4YJR116W 840 nt9.84□□□□□ -0.83
RTR1P40084 WSC3YOL105C 1671 nt9.83□□□□□ -0.84
RTR1P40084 ALG7YBR243C 1347 nt9.83□□□□□ -0.84
RTR1P40084 NUP53YMR153W 1428 nt9.83□□□□□ -0.84
RTR1P40084 TGL5YOR081C 2250 nt9.83□□□□□ -0.84
RTR1P40084 MRN1YPL184C 1839 nt9.83□□□□□ -0.84
RTR1P40084 WSC4YHL028W 1818 nt9.82□□□□□ -0.84
RTR1P40084 KAE1YKR038C 1161 nt9.82□□□□□ -0.84
RTR1P40084 YJL043WYJL043W 774 nt9.81□□□□□ -0.84
RTR1P40084 YGR137WYGR137W 375 nt9.8□□□□□ -0.84
RTR1P40084 YRF1-3YGR296W 5580 nt9.8□□□□□ -0.84
RTR1P40084 YRF1-6YNL339C 5580 nt9.8□□□□□ -0.84
RTR1P40084 YRF1-7YPL283C 5580 nt9.8□□□□□ -0.84
RTR1P40084 INM1YHR046C 888 nt9.79□□□□□ -0.84
RTR1P40084 MRP7YNL005C 1116 nt9.79□□□□□ -0.84
RTR1P40084 YNL140CYNL140C 570 nt9.79□□□□□ -0.84
RTR1P40084 MIM1YOL026C 342 nt9.79□□□□□ -0.84
RTR1P40084 ARG7YMR062C 1326 nt9.79□□□□□ -0.84
RTR1P40084 TIF3YPR163C 1311 nt9.79□□□□□ -0.84
RTR1P40084 APT1YML022W 564 nt9.78□□□□□ -0.84
RTR1P40084 PSP2YML017W 1782 nt9.78□□□□□ -0.84
RTR1P40084 HBS1YKR084C 1836 nt9.77□□□□□ -0.84
RTR1P40084 ORT1YOR130C 879 nt9.77□□□□□ -0.85
RTR1P40084 HAC1YFL031W 717 nt9.76□□□□□ -0.85
RTR1P40084 SNP1YIL061C 903 nt9.76□□□□□ -0.85
RTR1P40084 FUS3YBL016W 1062 nt9.76□□□□□ -0.85
RTR1P40084 EDC2YER035W 438 nt9.74□□□□□ -0.85
RTR1P40084 DUR3YHL016C 2208 nt9.72□□□□□ -0.85
RTR1P40084 PET494YNR045W 1470 nt9.72□□□□□ -0.85
RTR1P40084 RRT6YGL146C 936 nt9.71□□□□□ -0.86
RTR1P40084 SPR1YOR190W 1338 nt9.71□□□□□ -0.86
RTR1P40084 PNS1YOR161C 1620 nt9.71□□□□□ -0.86
RTR1P40084 FRE6YLL051C 2139 nt9.7□□□□□ -0.86
RTR1P40084 DST1YGL043W 930 nt9.7□□□□□ -0.86
RTR1P40084 ELP6YMR312W 822 nt9.69□□□□□ -0.86
RTR1P40084 CPT1YNL130C 1182 nt9.69□□□□□ -0.86
RTR1P40084 MTC6YHR151C 1581 nt9.68□□□□□ -0.86
RTR1P40084 YOR072WYOR072W 315 nt9.68□□□□□ -0.86
RTR1P40084 MNN9YPL050C 1188 nt9.68□□□□□ -0.86
RTR1P40084 KTR4YBR199W 1395 nt9.66□□□□□ -0.86
RTR1P40084 YIL177CYIL177C 5277 nt9.66□□□□□ -0.86
RTR1P40084 YOR268CYOR268C 399 nt9.66□□□□□ -0.86
RTR1P40084 snR4snR4 186 nt9.66□□□□□ -0.86
Retrieved 100 of 7,029 protein–RNA pairs in 51.5 ms