Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC32.98■■■□□ 2.87
RFC4P35249 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC32.96■■■□□ 2.87
RFC4P35249 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC32.96■■■□□ 2.87
RFC4P35249 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
RFC4P35249 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
RFC4P35249 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC32.96■■■□□ 2.87
RFC4P35249 AL033527.3-201ENST00000566366 1196 ntBASIC32.96■■■□□ 2.87
RFC4P35249 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC32.95■■■□□ 2.87
RFC4P35249 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.86
RFC4P35249 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC32.95■■■□□ 2.86
RFC4P35249 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC32.95■■■□□ 2.86
RFC4P35249 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC32.94■■■□□ 2.86
RFC4P35249 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC32.94■■■□□ 2.86
RFC4P35249 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
RFC4P35249 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC32.94■■■□□ 2.86
RFC4P35249 CHST11-203ENST00000547956 936 ntTSL 2 BASIC32.94■■■□□ 2.86
RFC4P35249 C11orf96-203ENST00000617612 1294 ntAPPRIS P1 BASIC32.94■■■□□ 2.86
RFC4P35249 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC32.94■■■□□ 2.86
RFC4P35249 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC32.93■■■□□ 2.86
RFC4P35249 CISD3-204ENST00000613478 2074 ntAPPRIS P1 TSL 2 BASIC32.92■■■□□ 2.86
RFC4P35249 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
RFC4P35249 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC32.9■■■□□ 2.86
RFC4P35249 U85056.1-201ENST00000616429 682 ntBASIC32.9■■■□□ 2.86
RFC4P35249 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC32.9■■■□□ 2.86
RFC4P35249 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC32.89■■■□□ 2.86
RFC4P35249 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC32.89■■■□□ 2.86
RFC4P35249 WHAMMP2-203ENST00000563942 1603 ntBASIC32.89■■■□□ 2.86
RFC4P35249 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC32.89■■■□□ 2.86
RFC4P35249 TRIM52-AS1-202ENST00000507434 672 ntTSL 1 (best) BASIC32.89■■■□□ 2.86
RFC4P35249 AC135983.2-203ENST00000454486 1613 ntBASIC32.88■■■□□ 2.85
RFC4P35249 AC018358.1-201ENST00000631079 1402 ntBASIC32.88■■■□□ 2.85
RFC4P35249 HYI-213ENST00000583037 1322 ntTSL 5 BASIC32.88■■■□□ 2.85
RFC4P35249 AC127502.1-201ENST00000399971 1502 ntBASIC32.87■■■□□ 2.85
RFC4P35249 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC32.86■■■□□ 2.85
RFC4P35249 AC060814.1-201ENST00000554326 538 ntBASIC32.85■■■□□ 2.85
RFC4P35249 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC32.85■■■□□ 2.85
RFC4P35249 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC32.84■■■□□ 2.85
RFC4P35249 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC32.84■■■□□ 2.85
RFC4P35249 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC32.83■■■□□ 2.85
RFC4P35249 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.85
RFC4P35249 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
RFC4P35249 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC32.82■■■□□ 2.84
RFC4P35249 AC110285.7-201ENST00000624417 1536 ntBASIC32.81■■■□□ 2.84
RFC4P35249 AC148477.6-201ENST00000623746 465 ntBASIC32.8■■■□□ 2.84
RFC4P35249 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
RFC4P35249 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
RFC4P35249 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC32.79■■■□□ 2.84
RFC4P35249 C9orf50-201ENST00000372478 1620 ntAPPRIS P2 TSL 2 BASIC32.79■■■□□ 2.84
RFC4P35249 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC32.78■■■□□ 2.84
RFC4P35249 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC32.78■■■□□ 2.84
RFC4P35249 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC32.78■■■□□ 2.84
RFC4P35249 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
RFC4P35249 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC32.76■■■□□ 2.83
RFC4P35249 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC32.76■■■□□ 2.83
RFC4P35249 TTC39C-209ENST00000584250 1048 ntTSL 1 (best) BASIC32.76■■■□□ 2.83
RFC4P35249 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC32.75■■■□□ 2.83
RFC4P35249 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC32.74■■■□□ 2.83
RFC4P35249 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC32.74■■■□□ 2.83
RFC4P35249 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC32.74■■■□□ 2.83
RFC4P35249 CSPG5-205ENST00000610462 2073 ntTSL 5 BASIC32.74■■■□□ 2.83
RFC4P35249 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
RFC4P35249 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC32.73■■■□□ 2.83
RFC4P35249 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC32.73■■■□□ 2.83
RFC4P35249 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC32.73■■■□□ 2.83
RFC4P35249 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
RFC4P35249 TSPY13P-201ENST00000338964 914 ntBASIC32.72■■■□□ 2.83
RFC4P35249 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC32.71■■■□□ 2.83
RFC4P35249 GFER-205ENST00000569451 517 ntTSL 5 BASIC32.71■■■□□ 2.83
RFC4P35249 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC32.7■■■□□ 2.83
RFC4P35249 KRT18P60-201ENST00000312876 1297 ntBASIC32.69■■■□□ 2.82
RFC4P35249 GPR137-202ENST00000377702 1478 ntTSL 1 (best) BASIC32.68■■■□□ 2.82
RFC4P35249 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
RFC4P35249 AC004987.1-201ENST00000428627 508 ntBASIC32.68■■■□□ 2.82
RFC4P35249 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
RFC4P35249 MIR219A2-201ENST00000608502 1504 ntBASIC32.67■■■□□ 2.82
RFC4P35249 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC32.67■■■□□ 2.82
RFC4P35249 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
RFC4P35249 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC32.67■■■□□ 2.82
RFC4P35249 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
RFC4P35249 RPS2-210ENST00000530225 765 ntTSL 2 BASIC32.66■■■□□ 2.82
RFC4P35249 AC092296.2-201ENST00000589470 999 ntBASIC32.66■■■□□ 2.82
RFC4P35249 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC32.66■■■□□ 2.82
RFC4P35249 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC32.66■■■□□ 2.82
RFC4P35249 ATP5G2P3-201ENST00000429083 425 ntBASIC32.65■■■□□ 2.82
RFC4P35249 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
RFC4P35249 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC32.64■■■□□ 2.82
RFC4P35249 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
RFC4P35249 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
RFC4P35249 TRIOBP-205ENST00000407319 2125 ntAPPRIS P3 TSL 1 (best) BASIC32.64■■■□□ 2.82
RFC4P35249 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
RFC4P35249 ATRNL1-209ENST00000609571 1818 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
RFC4P35249 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
RFC4P35249 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC32.63■■■□□ 2.81
RFC4P35249 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC32.62■■■□□ 2.81
RFC4P35249 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
RFC4P35249 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC32.62■■■□□ 2.81
RFC4P35249 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC32.61■■■□□ 2.81
RFC4P35249 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
RFC4P35249 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC32.6■■■□□ 2.81
RFC4P35249 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC32.59■■■□□ 2.81
Retrieved 100 of 98,524 protein–RNA pairs in 135.4 ms