Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Tgfbr1-205ENSMUST00000126171 1829 ntTSL 5 BASIC18.69■□□□□ 0.58
Cdx1P18111 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Cdx1P18111 Raly-202ENSMUST00000058089 1747 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Cdx1P18111 Bcl11b-202ENSMUST00000109887 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Cdx1P18111 Rundc3b-202ENSMUST00000115378 1891 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Cdx1P18111 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC18.67■□□□□ 0.58
Cdx1P18111 Mthfd2l-203ENSMUST00000202781 688 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cdx1P18111 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Cdx1P18111 Gm6277-202ENSMUST00000224036 2779 ntBASIC18.66■□□□□ 0.58
Cdx1P18111 Sh3d21-202ENSMUST00000097891 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Cdx1P18111 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC18.65■□□□□ 0.58
Cdx1P18111 Strn3-202ENSMUST00000169503 2791 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Cdx1P18111 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cdx1P18111 Tnfsf12-202ENSMUST00000181810 1435 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cdx1P18111 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cdx1P18111 Runx3-202ENSMUST00000119564 1855 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Cdx1P18111 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
Cdx1P18111 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.58
Cdx1P18111 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC18.64■□□□□ 0.57
Cdx1P18111 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC18.64■□□□□ 0.57
Cdx1P18111 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC18.64■□□□□ 0.57
Cdx1P18111 Neurl4-201ENSMUST00000061837 5188 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
Cdx1P18111 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Cdx1P18111 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
Cdx1P18111 Agps-202ENSMUST00000111952 2589 ntTSL 2 BASIC18.63■□□□□ 0.57
Cdx1P18111 Pgbd5-204ENSMUST00000140012 3222 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Cdx1P18111 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cdx1P18111 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Cdx1P18111 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cdx1P18111 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Cdx1P18111 Vsig8-202ENSMUST00000177086 1519 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Cdx1P18111 Iglon5-201ENSMUST00000107974 2622 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cdx1P18111 Kcnip2-202ENSMUST00000079431 2302 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cdx1P18111 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Cdx1P18111 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cdx1P18111 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Cdx1P18111 Ubl4a-207ENSMUST00000178691 1038 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Cdx1P18111 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC18.61■□□□□ 0.57
Cdx1P18111 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cdx1P18111 Brf1-201ENSMUST00000011302 2615 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
Cdx1P18111 Kif1bp-201ENSMUST00000065887 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cdx1P18111 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Cdx1P18111 Kcnk12-201ENSMUST00000055221 1936 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Cdx1P18111 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
Cdx1P18111 Mnx1-202ENSMUST00000165512 2245 ntAPPRIS P2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cdx1P18111 C2cd4d-201ENSMUST00000169433 1321 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
Cdx1P18111 Ranbp1-202ENSMUST00000115645 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Cdx1P18111 Gm11613-201ENSMUST00000134427 1971 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Cdx1P18111 Cotl1-201ENSMUST00000034285 1596 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cdx1P18111 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cdx1P18111 Lsm14b-201ENSMUST00000055485 2534 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cdx1P18111 Hand2-201ENSMUST00000040104 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cdx1P18111 Pradc1-202ENSMUST00000113770 610 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Cdx1P18111 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Cdx1P18111 Pan3-201ENSMUST00000031651 5048 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
Cdx1P18111 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC18.58■□□□□ 0.57
Cdx1P18111 2810459M11Rik-201ENSMUST00000027429 1225 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
Cdx1P18111 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Cdx1P18111 Ube2f-202ENSMUST00000171112 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Cdx1P18111 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
Cdx1P18111 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
Cdx1P18111 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Cdx1P18111 Orai1-201ENSMUST00000051016 1482 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
Cdx1P18111 Prelid3b-201ENSMUST00000016401 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
Cdx1P18111 Klc1-201ENSMUST00000084941 2504 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
Cdx1P18111 BC037034-205ENSMUST00000159649 2093 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Cdx1P18111 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
Cdx1P18111 Ssbp3-203ENSMUST00000097934 1742 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
Cdx1P18111 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
Cdx1P18111 Spg7-201ENSMUST00000108868 845 ntTSL 2 BASIC18.55■□□□□ 0.56
Cdx1P18111 Gm24970-201ENSMUST00000175582 82 ntBASIC18.55■□□□□ 0.56
Cdx1P18111 Gga1-201ENSMUST00000041587 3034 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cdx1P18111 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cdx1P18111 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cdx1P18111 Trafd1-201ENSMUST00000042312 2503 ntAPPRIS P4 TSL 1 (best) BASIC18.55■□□□□ 0.56
Cdx1P18111 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cdx1P18111 Ube2e3-201ENSMUST00000028398 2249 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cdx1P18111 Lrp2-202ENSMUST00000092551 2228 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Cdx1P18111 Kmt5a-201ENSMUST00000059580 2739 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cdx1P18111 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
Cdx1P18111 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cdx1P18111 Tbx1-201ENSMUST00000009241 1777 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
Cdx1P18111 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
Cdx1P18111 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC18.54■□□□□ 0.56
Cdx1P18111 Arhgef25-205ENSMUST00000218654 2475 ntTSL 5 BASIC18.54■□□□□ 0.56
Cdx1P18111 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC18.53■□□□□ 0.56
Cdx1P18111 Guf1-201ENSMUST00000031113 1769 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
Cdx1P18111 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cdx1P18111 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC18.53■□□□□ 0.56
Cdx1P18111 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Cdx1P18111 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC18.52■□□□□ 0.56
Cdx1P18111 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Cdx1P18111 Rsrc1-202ENSMUST00000065047 2736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Cdx1P18111 Ajap1-201ENSMUST00000105646 3048 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
Cdx1P18111 Mid2-201ENSMUST00000112988 2525 ntTSL 5 BASIC18.51■□□□□ 0.55
Cdx1P18111 Reep6-203ENSMUST00000105355 2127 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cdx1P18111 Reep6-204ENSMUST00000105357 2127 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Cdx1P18111 Gkap1-201ENSMUST00000091579 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Cdx1P18111 Tsen34-203ENSMUST00000108629 1238 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Cdx1P18111 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC18.5■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 30.9 ms