Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CXCL1P09341 SP8-202ENST00000418710 1618 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CXCL1P09341 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CXCL1P09341 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CXCL1P09341 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CXCL1P09341 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
CXCL1P09341 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CXCL1P09341 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CXCL1P09341 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
CXCL1P09341 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
CXCL1P09341 ACSS1-202ENST00000376726 2244 ntTSL 2 BASIC19.86■□□□□ 0.77
CXCL1P09341 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CXCL1P09341 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC19.86■□□□□ 0.77
CXCL1P09341 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CXCL1P09341 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC19.86■□□□□ 0.77
CXCL1P09341 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
CXCL1P09341 RNF130-201ENST00000261947 1766 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CXCL1P09341 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CXCL1P09341 GCLC-209ENST00000514004 2356 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
CXCL1P09341 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CXCL1P09341 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CXCL1P09341 AL360182.2-201ENST00000451656 470 ntTSL 3 BASIC19.85■□□□□ 0.77
CXCL1P09341 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CXCL1P09341 AC006077.2-201ENST00000623591 457 ntBASIC19.84■□□□□ 0.77
CXCL1P09341 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
CXCL1P09341 CHCHD4-201ENST00000295767 1603 ntTSL 2 BASIC19.84■□□□□ 0.77
CXCL1P09341 AC091060.1-201ENST00000623524 1766 ntBASIC19.83■□□□□ 0.77
CXCL1P09341 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
CXCL1P09341 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
CXCL1P09341 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.76
CXCL1P09341 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.76
CXCL1P09341 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
CXCL1P09341 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC19.82■□□□□ 0.76
CXCL1P09341 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
CXCL1P09341 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC19.8■□□□□ 0.76
CXCL1P09341 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CXCL1P09341 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CXCL1P09341 PRR5-ARHGAP8-202ENST00000361473 2013 ntTSL 5 BASIC19.8■□□□□ 0.76
CXCL1P09341 DYRK1B-201ENST00000323039 2535 ntAPPRIS P3 TSL 1 (best) BASIC19.8■□□□□ 0.76
CXCL1P09341 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CXCL1P09341 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CXCL1P09341 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
CXCL1P09341 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
CXCL1P09341 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC19.78■□□□□ 0.76
CXCL1P09341 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC19.78■□□□□ 0.76
CXCL1P09341 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC19.77■□□□□ 0.76
CXCL1P09341 RARA-203ENST00000394086 2008 ntTSL 2 BASIC19.77■□□□□ 0.76
CXCL1P09341 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
CXCL1P09341 LINC01578-201ENST00000553829 732 ntTSL 2 BASIC19.77■□□□□ 0.76
CXCL1P09341 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
CXCL1P09341 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CXCL1P09341 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC19.77■□□□□ 0.76
CXCL1P09341 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
CXCL1P09341 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC19.77■□□□□ 0.75
CXCL1P09341 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.75
CXCL1P09341 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
CXCL1P09341 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC19.76■□□□□ 0.75
CXCL1P09341 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CXCL1P09341 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC19.75■□□□□ 0.75
CXCL1P09341 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CXCL1P09341 CYBA-201ENST00000261623 797 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CXCL1P09341 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
CXCL1P09341 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
CXCL1P09341 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC19.75■□□□□ 0.75
CXCL1P09341 NRGN-201ENST00000284292 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CXCL1P09341 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CXCL1P09341 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CXCL1P09341 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CXCL1P09341 MAGI2-215ENST00000628980 6212 ntTSL 5 BASIC19.74■□□□□ 0.75
CXCL1P09341 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC19.74■□□□□ 0.75
CXCL1P09341 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CXCL1P09341 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC19.73■□□□□ 0.75
CXCL1P09341 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC19.73■□□□□ 0.75
CXCL1P09341 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CXCL1P09341 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CXCL1P09341 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CXCL1P09341 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CXCL1P09341 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CXCL1P09341 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CXCL1P09341 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CXCL1P09341 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CXCL1P09341 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CXCL1P09341 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC19.72■□□□□ 0.75
CXCL1P09341 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CXCL1P09341 THRA-202ENST00000394121 2260 ntTSL 2 BASIC19.72■□□□□ 0.75
CXCL1P09341 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC19.71■□□□□ 0.75
CXCL1P09341 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CXCL1P09341 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC19.71■□□□□ 0.75
CXCL1P09341 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
CXCL1P09341 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
CXCL1P09341 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CXCL1P09341 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CXCL1P09341 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
CXCL1P09341 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CXCL1P09341 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CXCL1P09341 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
CXCL1P09341 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC19.68■□□□□ 0.74
CXCL1P09341 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CXCL1P09341 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CXCL1P09341 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms