Protein–RNA interactions for Protein: P07339

CTSD, Cathepsin D, humanhuman

Predicted RBP Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTSDP07339 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
CTSDP07339 HRH3-201ENST00000317393 1419 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CTSDP07339 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
CTSDP07339 DHRS13-201ENST00000378895 1921 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CTSDP07339 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
CTSDP07339 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CTSDP07339 HMCES-202ENST00000389735 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTSDP07339 MAP6D1-202ENST00000431348 890 ntAPPRIS ALT2 TSL 2 BASIC21.26■□□□□ 0.99
CTSDP07339 KLF16-203ENST00000592313 508 ntTSL 3 BASIC21.26■□□□□ 0.99
CTSDP07339 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CTSDP07339 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.25■□□□□ 0.99
CTSDP07339 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTSDP07339 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC21.25■□□□□ 0.99
CTSDP07339 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CTSDP07339 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CTSDP07339 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC21.24■□□□□ 0.99
CTSDP07339 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC21.24■□□□□ 0.99
CTSDP07339 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTSDP07339 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CTSDP07339 C1orf122-204ENST00000468084 1234 ntAPPRIS ALT2 TSL 2 BASIC21.23■□□□□ 0.99
CTSDP07339 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CTSDP07339 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CTSDP07339 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTSDP07339 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTSDP07339 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC21.22■□□□□ 0.99
CTSDP07339 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTSDP07339 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTSDP07339 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CTSDP07339 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
CTSDP07339 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CTSDP07339 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
CTSDP07339 STUB1-201ENST00000219548 1472 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTSDP07339 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
CTSDP07339 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
CTSDP07339 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.2■□□□□ 0.98
CTSDP07339 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTSDP07339 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CTSDP07339 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CTSDP07339 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.19■□□□□ 0.98
CTSDP07339 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CTSDP07339 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC21.18■□□□□ 0.98
CTSDP07339 PKM-203ENST00000389093 2279 ntTSL 5 BASIC21.17■□□□□ 0.98
CTSDP07339 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC21.17■□□□□ 0.98
CTSDP07339 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTSDP07339 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CTSDP07339 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC21.17■□□□□ 0.98
CTSDP07339 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CTSDP07339 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTSDP07339 AL449106.1-201ENST00000608517 1980 ntBASIC21.16■□□□□ 0.98
CTSDP07339 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTSDP07339 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CTSDP07339 GSX1-201ENST00000302945 1663 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTSDP07339 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTSDP07339 AC127502.1-201ENST00000399971 1502 ntBASIC21.15■□□□□ 0.98
CTSDP07339 NRTN-201ENST00000303212 1109 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTSDP07339 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CTSDP07339 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CTSDP07339 TBCC-201ENST00000372876 1616 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
CTSDP07339 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CTSDP07339 GPR150-201ENST00000380007 2065 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
CTSDP07339 NRGN-202ENST00000412681 1106 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTSDP07339 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC21.13■□□□□ 0.97
CTSDP07339 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
CTSDP07339 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC21.13■□□□□ 0.97
CTSDP07339 CAPN10-204ENST00000354082 1999 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CTSDP07339 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
CTSDP07339 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC21.12■□□□□ 0.97
CTSDP07339 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
CTSDP07339 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CTSDP07339 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTSDP07339 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC21.11■□□□□ 0.97
CTSDP07339 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CTSDP07339 COMMD3-201ENST00000376836 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTSDP07339 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
CTSDP07339 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CTSDP07339 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
CTSDP07339 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CTSDP07339 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CTSDP07339 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CTSDP07339 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC21.08■□□□□ 0.97
CTSDP07339 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CTSDP07339 AC100797.4-201ENST00000631653 1827 ntBASIC21.08■□□□□ 0.96
CTSDP07339 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CTSDP07339 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.08■□□□□ 0.96
CTSDP07339 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTSDP07339 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTSDP07339 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CTSDP07339 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC21.07■□□□□ 0.96
CTSDP07339 LY6K-203ENST00000519387 963 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
CTSDP07339 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.07■□□□□ 0.96
CTSDP07339 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC21.06■□□□□ 0.96
CTSDP07339 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CTSDP07339 CCNYL1-205ENST00000420822 952 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CTSDP07339 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CTSDP07339 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CTSDP07339 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CTSDP07339 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CTSDP07339 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CTSDP07339 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CTSDP07339 HOXD-AS2-202ENST00000440016 999 ntTSL 5 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms