Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 CAPNS1-201ENST00000246533 1918 ntAPPRIS P2 TSL 1 (best) BASIC29.75■■■□□ 2.35
SMCHD1A6NHR9 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC29.75■■■□□ 2.35
SMCHD1A6NHR9 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
SMCHD1A6NHR9 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC29.75■■■□□ 2.35
SMCHD1A6NHR9 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC29.75■■■□□ 2.35
SMCHD1A6NHR9 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC29.74■■■□□ 2.35
SMCHD1A6NHR9 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC29.74■■■□□ 2.35
SMCHD1A6NHR9 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC29.73■■■□□ 2.35
SMCHD1A6NHR9 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC29.73■■■□□ 2.35
SMCHD1A6NHR9 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC29.73■■■□□ 2.35
SMCHD1A6NHR9 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
SMCHD1A6NHR9 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC29.72■■■□□ 2.35
SMCHD1A6NHR9 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC29.71■■■□□ 2.35
SMCHD1A6NHR9 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC29.7■■■□□ 2.35
SMCHD1A6NHR9 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC29.69■■■□□ 2.34
SMCHD1A6NHR9 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
SMCHD1A6NHR9 MARCKSL1-201ENST00000329421 1699 ntAPPRIS P1 TSL 1 (best) BASIC29.69■■■□□ 2.34
SMCHD1A6NHR9 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC29.69■■■□□ 2.34
SMCHD1A6NHR9 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC29.68■■■□□ 2.34
SMCHD1A6NHR9 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC29.67■■■□□ 2.34
SMCHD1A6NHR9 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC29.67■■■□□ 2.34
SMCHD1A6NHR9 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC29.67■■■□□ 2.34
SMCHD1A6NHR9 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC29.66■■■□□ 2.34
SMCHD1A6NHR9 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
SMCHD1A6NHR9 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC29.66■■■□□ 2.34
SMCHD1A6NHR9 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC29.65■■■□□ 2.34
SMCHD1A6NHR9 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC29.64■■■□□ 2.34
SMCHD1A6NHR9 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC29.64■■■□□ 2.33
SMCHD1A6NHR9 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC29.64■■■□□ 2.33
SMCHD1A6NHR9 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC29.63■■■□□ 2.33
SMCHD1A6NHR9 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC29.62■■■□□ 2.33
SMCHD1A6NHR9 PEX7-203ENST00000541292 945 ntTSL 5 BASIC29.62■■■□□ 2.33
SMCHD1A6NHR9 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC29.62■■■□□ 2.33
SMCHD1A6NHR9 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC29.62■■■□□ 2.33
SMCHD1A6NHR9 CBWD5-202ENST00000377384 1347 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
SMCHD1A6NHR9 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC29.61■■■□□ 2.33
SMCHD1A6NHR9 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC29.6■■■□□ 2.33
SMCHD1A6NHR9 RARRES2P2-201ENST00000394842 485 ntBASIC29.59■■■□□ 2.33
SMCHD1A6NHR9 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC29.59■■■□□ 2.33
SMCHD1A6NHR9 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC29.59■■■□□ 2.33
SMCHD1A6NHR9 ST7-205ENST00000393446 2114 ntTSL 5 BASIC29.58■■■□□ 2.33
SMCHD1A6NHR9 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
SMCHD1A6NHR9 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
SMCHD1A6NHR9 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC29.58■■■□□ 2.33
SMCHD1A6NHR9 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC29.58■■■□□ 2.33
SMCHD1A6NHR9 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC29.58■■■□□ 2.33
SMCHD1A6NHR9 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC29.57■■■□□ 2.32
SMCHD1A6NHR9 IGFBP2-201ENST00000233809 1439 ntAPPRIS P1 TSL 1 (best) BASIC29.56■■■□□ 2.32
SMCHD1A6NHR9 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC29.56■■■□□ 2.32
SMCHD1A6NHR9 ABCB10P1-201ENST00000614297 2181 ntBASIC29.56■■■□□ 2.32
SMCHD1A6NHR9 ST7-202ENST00000323984 2142 ntTSL 5 BASIC29.55■■■□□ 2.32
SMCHD1A6NHR9 ST7-207ENST00000393449 2127 ntTSL 5 BASIC29.55■■■□□ 2.32
SMCHD1A6NHR9 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC29.54■■■□□ 2.32
SMCHD1A6NHR9 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
SMCHD1A6NHR9 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
SMCHD1A6NHR9 GPX1-201ENST00000419349 1106 ntBASIC29.54■■■□□ 2.32
SMCHD1A6NHR9 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
SMCHD1A6NHR9 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
SMCHD1A6NHR9 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC29.54■■■□□ 2.32
SMCHD1A6NHR9 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC29.54■■■□□ 2.32
SMCHD1A6NHR9 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC29.54■■■□□ 2.32
SMCHD1A6NHR9 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC29.54■■■□□ 2.32
SMCHD1A6NHR9 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC29.54■■■□□ 2.32
SMCHD1A6NHR9 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC29.53■■■□□ 2.32
SMCHD1A6NHR9 MAZ-205ENST00000562337 1574 ntTSL 3 BASIC29.53■■■□□ 2.32
SMCHD1A6NHR9 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC29.52■■■□□ 2.32
SMCHD1A6NHR9 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC29.52■■■□□ 2.32
SMCHD1A6NHR9 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC29.52■■■□□ 2.32
SMCHD1A6NHR9 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC29.52■■■□□ 2.32
SMCHD1A6NHR9 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC29.51■■■□□ 2.32
SMCHD1A6NHR9 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC29.5■■■□□ 2.31
SMCHD1A6NHR9 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC29.5■■■□□ 2.31
SMCHD1A6NHR9 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
SMCHD1A6NHR9 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
SMCHD1A6NHR9 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC29.5■■■□□ 2.31
SMCHD1A6NHR9 ABHD17AP5-201ENST00000580133 923 ntBASIC29.5■■■□□ 2.31
SMCHD1A6NHR9 TMEM55B-202ENST00000398020 1696 ntAPPRIS ALT1 TSL 1 (best) BASIC29.49■■■□□ 2.31
SMCHD1A6NHR9 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC29.49■■■□□ 2.31
SMCHD1A6NHR9 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC29.48■■■□□ 2.31
SMCHD1A6NHR9 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC29.48■■■□□ 2.31
SMCHD1A6NHR9 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC29.48■■■□□ 2.31
SMCHD1A6NHR9 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC29.47■■■□□ 2.31
SMCHD1A6NHR9 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC29.47■■■□□ 2.31
SMCHD1A6NHR9 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
SMCHD1A6NHR9 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
SMCHD1A6NHR9 EIF5A-202ENST00000336458 1511 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
SMCHD1A6NHR9 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC29.46■■■□□ 2.31
SMCHD1A6NHR9 IGFBPL1-201ENST00000377694 1093 ntAPPRIS P1 TSL 2 BASIC29.46■■■□□ 2.31
SMCHD1A6NHR9 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC29.46■■■□□ 2.31
SMCHD1A6NHR9 TPT1-202ENST00000379055 948 ntTSL 2 BASIC29.45■■■□□ 2.31
SMCHD1A6NHR9 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC29.45■■■□□ 2.3
SMCHD1A6NHR9 AC148477.6-201ENST00000623746 465 ntBASIC29.45■■■□□ 2.3
SMCHD1A6NHR9 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC29.44■■■□□ 2.3
SMCHD1A6NHR9 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
SMCHD1A6NHR9 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
SMCHD1A6NHR9 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
SMCHD1A6NHR9 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
SMCHD1A6NHR9 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC29.44■■■□□ 2.3
SMCHD1A6NHR9 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC29.43■■■□□ 2.3
SMCHD1A6NHR9 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC29.43■■■□□ 2.3
Retrieved 100 of 98,524 protein–RNA pairs in 19.2 ms