Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Agap2-201ENSMUST00000039259 5633 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav11A0A0B4J1J9 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav11A0A0B4J1J9 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav11A0A0B4J1J9 Cdr2-201ENSMUST00000033169 2525 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav11A0A0B4J1J9 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav11A0A0B4J1J9 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trav11A0A0B4J1J9 Gm16148-201ENSMUST00000119653 893 ntBASIC16.04■□□□□ 0.16
Trav11A0A0B4J1J9 B4galt2-201ENSMUST00000030266 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav11A0A0B4J1J9 2700081O15Rik-202ENSMUST00000159348 4989 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Trav11A0A0B4J1J9 E2f5-202ENSMUST00000165922 1751 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
Trav11A0A0B4J1J9 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav11A0A0B4J1J9 Irak1-202ENSMUST00000068286 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav11A0A0B4J1J9 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav11A0A0B4J1J9 Deaf1-201ENSMUST00000080553 2135 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav11A0A0B4J1J9 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trav11A0A0B4J1J9 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trav11A0A0B4J1J9 Olfm1-201ENSMUST00000028177 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trav11A0A0B4J1J9 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trav11A0A0B4J1J9 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trav11A0A0B4J1J9 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trav11A0A0B4J1J9 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trav11A0A0B4J1J9 H2afy-202ENSMUST00000045788 1933 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
Trav11A0A0B4J1J9 Cadps-202ENSMUST00000112657 5455 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
Trav11A0A0B4J1J9 Dcbld2-201ENSMUST00000046663 6561 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Trav11A0A0B4J1J9 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav11A0A0B4J1J9 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
Trav11A0A0B4J1J9 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav11A0A0B4J1J9 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
Trav11A0A0B4J1J9 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
Trav11A0A0B4J1J9 Hdac2-201ENSMUST00000019911 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trav11A0A0B4J1J9 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trav11A0A0B4J1J9 Gm24804-201ENSMUST00000174982 85 ntBASIC15.99■□□□□ 0.15
Trav11A0A0B4J1J9 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC15.99■□□□□ 0.15
Trav11A0A0B4J1J9 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trav11A0A0B4J1J9 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
Trav11A0A0B4J1J9 Mxi1-202ENSMUST00000025998 4996 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav11A0A0B4J1J9 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav11A0A0B4J1J9 Kctd15-202ENSMUST00000108069 2407 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
Trav11A0A0B4J1J9 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav11A0A0B4J1J9 Ccsap-201ENSMUST00000034452 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav11A0A0B4J1J9 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC15.98■□□□□ 0.15
Trav11A0A0B4J1J9 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC15.98■□□□□ 0.15
Trav11A0A0B4J1J9 Dnpep-201ENSMUST00000066668 2488 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav11A0A0B4J1J9 Homer3-201ENSMUST00000003669 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav11A0A0B4J1J9 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Trav11A0A0B4J1J9 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
Trav11A0A0B4J1J9 Osbpl10-207ENSMUST00000183104 2477 ntAPPRIS P1 TSL 5 BASIC15.96■□□□□ 0.15
Trav11A0A0B4J1J9 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC15.96■□□□□ 0.15
Trav11A0A0B4J1J9 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trav11A0A0B4J1J9 Hoxd9-201ENSMUST00000059272 2136 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trav11A0A0B4J1J9 Agap2-202ENSMUST00000217941 5573 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
Trav11A0A0B4J1J9 Tshz1-201ENSMUST00000060303 5656 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav11A0A0B4J1J9 Ei24-201ENSMUST00000115086 2220 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav11A0A0B4J1J9 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav11A0A0B4J1J9 Man1a-201ENSMUST00000003843 5137 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav11A0A0B4J1J9 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav11A0A0B4J1J9 Foxa2-202ENSMUST00000109964 2070 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav11A0A0B4J1J9 Gm38287-201ENSMUST00000195193 2051 ntTSL 3 BASIC15.95■□□□□ 0.14
Trav11A0A0B4J1J9 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC15.95■□□□□ 0.14
Trav11A0A0B4J1J9 Wnt2-201ENSMUST00000010941 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav11A0A0B4J1J9 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Trav11A0A0B4J1J9 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
Trav11A0A0B4J1J9 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC15.95■□□□□ 0.14
Trav11A0A0B4J1J9 Eml4-202ENSMUST00000096766 5445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav11A0A0B4J1J9 Fam212b-202ENSMUST00000098273 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav11A0A0B4J1J9 Lgi2-201ENSMUST00000039750 6456 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav11A0A0B4J1J9 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav11A0A0B4J1J9 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC15.95■□□□□ 0.14
Trav11A0A0B4J1J9 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC15.95■□□□□ 0.14
Trav11A0A0B4J1J9 Hoxa13-201ENSMUST00000047993 1309 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
Trav11A0A0B4J1J9 Vps37b-201ENSMUST00000040967 2522 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav11A0A0B4J1J9 Gm266-201ENSMUST00000010673 1215 ntAPPRIS P1 BASIC15.94■□□□□ 0.14
Trav11A0A0B4J1J9 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
Trav11A0A0B4J1J9 Efna2-201ENSMUST00000003154 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
Trav11A0A0B4J1J9 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC15.94■□□□□ 0.14
Trav11A0A0B4J1J9 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
Trav11A0A0B4J1J9 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC15.93■□□□□ 0.14
Trav11A0A0B4J1J9 Epop-201ENSMUST00000052281 2314 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
Trav11A0A0B4J1J9 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
Trav11A0A0B4J1J9 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
Trav11A0A0B4J1J9 H1f0-201ENSMUST00000180086 2287 ntAPPRIS P1 BASIC15.92■□□□□ 0.14
Trav11A0A0B4J1J9 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Trav11A0A0B4J1J9 St7-205ENSMUST00000081635 2115 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Trav11A0A0B4J1J9 Mapk1-201ENSMUST00000023462 2390 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
Trav11A0A0B4J1J9 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Trav11A0A0B4J1J9 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
Trav11A0A0B4J1J9 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav11A0A0B4J1J9 Cnot6-203ENSMUST00000145353 5736 ntAPPRIS P1 TSL 5 BASIC15.91■□□□□ 0.14
Trav11A0A0B4J1J9 Slc25a33-201ENSMUST00000105686 1887 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav11A0A0B4J1J9 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav11A0A0B4J1J9 Pdcd4-201ENSMUST00000025931 2330 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav11A0A0B4J1J9 Ccsap-202ENSMUST00000122421 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
Trav11A0A0B4J1J9 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
Trav11A0A0B4J1J9 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trav11A0A0B4J1J9 Mgrn1-202ENSMUST00000070658 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trav11A0A0B4J1J9 Tfeb-202ENSMUST00000086932 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trav11A0A0B4J1J9 Ubp1-204ENSMUST00000214095 2320 ntAPPRIS ALT1 TSL 1 (best) BASIC15.9■□□□□ 0.14
Trav11A0A0B4J1J9 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Trav11A0A0B4J1J9 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
Trav11A0A0B4J1J9 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC15.89■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 55 ms