Protein–RNA interactions for Protein: A0A075B6B9

Trav6d-5, T cell receptor alpha variable 6D-5 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-5A0A075B6B9 Cys1-207ENSMUST00000186602 1757 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trav6d-5A0A075B6B9 Pde8b-204ENSMUST00000159608 2370 ntTSL 5 BASIC19.07■□□□□ 0.64
Trav6d-5A0A075B6B9 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Trav6d-5A0A075B6B9 Elf2-203ENSMUST00000108051 2514 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Trav6d-5A0A075B6B9 Ctage5-218ENSMUST00000177162 2728 ntTSL 5 BASIC19.07■□□□□ 0.64
Trav6d-5A0A075B6B9 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
Trav6d-5A0A075B6B9 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Trav6d-5A0A075B6B9 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav6d-5A0A075B6B9 Ran-202ENSMUST00000111343 2423 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav6d-5A0A075B6B9 Smox-201ENSMUST00000028806 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav6d-5A0A075B6B9 Kansl1l-202ENSMUST00000113987 2342 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Trav6d-5A0A075B6B9 Tspan33-202ENSMUST00000115250 1977 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav6d-5A0A075B6B9 Yars2-201ENSMUST00000059955 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav6d-5A0A075B6B9 Tmem260-210ENSMUST00000227440 2222 ntAPPRIS ALT2 BASIC19.05■□□□□ 0.64
Trav6d-5A0A075B6B9 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav6d-5A0A075B6B9 Foxd2-201ENSMUST00000068654 2592 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
Trav6d-5A0A075B6B9 Tsc22d1-204ENSMUST00000110888 4999 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
Trav6d-5A0A075B6B9 Dusp5-201ENSMUST00000038287 2473 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
Trav6d-5A0A075B6B9 Tirap-205ENSMUST00000176685 1783 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trav6d-5A0A075B6B9 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Trav6d-5A0A075B6B9 Hdac1-201ENSMUST00000102597 2038 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trav6d-5A0A075B6B9 2810002D19Rik-201ENSMUST00000152313 2040 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Trav6d-5A0A075B6B9 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Trav6d-5A0A075B6B9 Tmpo-204ENSMUST00000099355 1953 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Trav6d-5A0A075B6B9 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Trav6d-5A0A075B6B9 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC19■□□□□ 0.63
Trav6d-5A0A075B6B9 Evl-202ENSMUST00000077735 2121 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Trav6d-5A0A075B6B9 Fam3c-201ENSMUST00000081288 1487 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trav6d-5A0A075B6B9 Zdhhc2-205ENSMUST00000167766 1759 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Trav6d-5A0A075B6B9 Slc16a11-211ENSMUST00000171032 1754 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Trav6d-5A0A075B6B9 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trav6d-5A0A075B6B9 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trav6d-5A0A075B6B9 Spsb3-205ENSMUST00000120943 1949 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trav6d-5A0A075B6B9 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Trav6d-5A0A075B6B9 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Trav6d-5A0A075B6B9 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Trav6d-5A0A075B6B9 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
Trav6d-5A0A075B6B9 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trav6d-5A0A075B6B9 Syndig1l-204ENSMUST00000222422 1758 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trav6d-5A0A075B6B9 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC18.97■□□□□ 0.63
Trav6d-5A0A075B6B9 Ddx43-201ENSMUST00000113367 2207 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Trav6d-5A0A075B6B9 Ppp1cc-202ENSMUST00000102528 2384 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav6d-5A0A075B6B9 Ip6k1-208ENSMUST00000176854 2251 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Trav6d-5A0A075B6B9 Prr5-201ENSMUST00000065499 1830 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav6d-5A0A075B6B9 Ptx3-201ENSMUST00000029421 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav6d-5A0A075B6B9 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trav6d-5A0A075B6B9 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trav6d-5A0A075B6B9 Gm17641-201ENSMUST00000166328 2350 ntBASIC18.96■□□□□ 0.63
Trav6d-5A0A075B6B9 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC18.96■□□□□ 0.63
Trav6d-5A0A075B6B9 D130020L05Rik-201ENSMUST00000180800 2431 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Trav6d-5A0A075B6B9 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav6d-5A0A075B6B9 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Trav6d-5A0A075B6B9 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC18.94■□□□□ 0.62
Trav6d-5A0A075B6B9 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trav6d-5A0A075B6B9 Suds3-201ENSMUST00000086471 2425 ntAPPRIS P3 TSL 1 (best) BASIC18.93■□□□□ 0.62
Trav6d-5A0A075B6B9 Gm42984-201ENSMUST00000195990 987 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
Trav6d-5A0A075B6B9 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav6d-5A0A075B6B9 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
Trav6d-5A0A075B6B9 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav6d-5A0A075B6B9 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
Trav6d-5A0A075B6B9 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Trav6d-5A0A075B6B9 Abhd17b-201ENSMUST00000052556 2475 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
Trav6d-5A0A075B6B9 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC18.91■□□□□ 0.62
Trav6d-5A0A075B6B9 E130309D02Rik-201ENSMUST00000046418 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav6d-5A0A075B6B9 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav6d-5A0A075B6B9 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trav6d-5A0A075B6B9 Fam126a-206ENSMUST00000197617 2288 ntTSL 5 BASIC18.9■□□□□ 0.62
Trav6d-5A0A075B6B9 Vdac2-201ENSMUST00000022293 1954 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav6d-5A0A075B6B9 Pdgfb-201ENSMUST00000000500 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
Trav6d-5A0A075B6B9 Elf2-204ENSMUST00000108053 2611 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trav6d-5A0A075B6B9 Ctage5-211ENSMUST00000176322 2649 ntTSL 5 BASIC18.9■□□□□ 0.62
Trav6d-5A0A075B6B9 Fance-203ENSMUST00000114803 1980 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
Trav6d-5A0A075B6B9 Shb-201ENSMUST00000061986 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav6d-5A0A075B6B9 Pex10-201ENSMUST00000103180 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav6d-5A0A075B6B9 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
Trav6d-5A0A075B6B9 Phf23-202ENSMUST00000101526 1706 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav6d-5A0A075B6B9 Hoxb3-202ENSMUST00000093944 3190 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
Trav6d-5A0A075B6B9 Gm8109-201ENSMUST00000194076 746 ntBASIC18.89■□□□□ 0.61
Trav6d-5A0A075B6B9 Qk-202ENSMUST00000097414 4658 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav6d-5A0A075B6B9 Fgf20-201ENSMUST00000034014 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
Trav6d-5A0A075B6B9 Armc10-201ENSMUST00000072896 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav6d-5A0A075B6B9 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC18.88■□□□□ 0.61
Trav6d-5A0A075B6B9 Znrf2-201ENSMUST00000079869 5886 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
Trav6d-5A0A075B6B9 Srp9-202ENSMUST00000111018 823 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trav6d-5A0A075B6B9 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
Trav6d-5A0A075B6B9 Aard-201ENSMUST00000090025 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
Trav6d-5A0A075B6B9 Mxra7-201ENSMUST00000021170 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav6d-5A0A075B6B9 Ube2g2-204ENSMUST00000174510 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav6d-5A0A075B6B9 Ttc9-201ENSMUST00000036116 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav6d-5A0A075B6B9 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav6d-5A0A075B6B9 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav6d-5A0A075B6B9 Hrh3-208ENSMUST00000171736 906 ntTSL 5 BASIC18.86■□□□□ 0.61
Trav6d-5A0A075B6B9 Irx1-201ENSMUST00000077337 2373 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
Trav6d-5A0A075B6B9 Nxph3-201ENSMUST00000058866 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav6d-5A0A075B6B9 Micu2-201ENSMUST00000022543 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
Trav6d-5A0A075B6B9 Fam149b-203ENSMUST00000090499 2370 ntAPPRIS P4 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav6d-5A0A075B6B9 Prph-202ENSMUST00000047104 1865 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav6d-5A0A075B6B9 Upf3a-201ENSMUST00000043767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav6d-5A0A075B6B9 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
Trav6d-5A0A075B6B9 Gm16148-201ENSMUST00000119653 893 ntBASIC18.83■□□□□ 0.6
Retrieved 100 of 76,532 protein–RNA pairs in 24.9 ms