Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Snord8-201ENSMUST00000175303 110 ntBASIC-0.8□□□□□ -2.54
ShhQ62226 Mir192-201ENSMUST00000083589 89 ntBASIC-0.8□□□□□ -2.54
ShhQ62226 Gm23826-201ENSMUST00000157394 119 ntBASIC-0.81□□□□□ -2.54
ShhQ62226 Gm22943-201ENSMUST00000158564 76 ntBASIC-0.81□□□□□ -2.54
ShhQ62226 Gm22474-201ENSMUST00000179407 107 ntBASIC-0.81□□□□□ -2.54
ShhQ62226 Gm23335-201ENSMUST00000117021 90 ntBASIC-0.82□□□□□ -2.54
ShhQ62226 Gm25465-201ENSMUST00000157716 105 ntBASIC-0.83□□□□□ -2.54
ShhQ62226 Mir1955-201ENSMUST00000158014 98 ntBASIC-0.83□□□□□ -2.54
ShhQ62226 Gm22260-201ENSMUST00000178643 107 ntBASIC-0.83□□□□□ -2.54
ShhQ62226 Mir379-201ENSMUST00000083564 66 ntBASIC-0.83□□□□□ -2.54
ShhQ62226 Mir295-201ENSMUST00000104694 69 ntBASIC-0.84□□□□□ -2.54
ShhQ62226 Gm22069-201ENSMUST00000179911 107 ntBASIC-0.84□□□□□ -2.54
ShhQ62226 Gm22401-201ENSMUST00000174927 117 ntBASIC-0.85□□□□□ -2.55
ShhQ62226 Mir122-201ENSMUST00000083468 66 ntBASIC-0.85□□□□□ -2.55
ShhQ62226 Gm23543-201ENSMUST00000158207 106 ntBASIC-0.86□□□□□ -2.55
ShhQ62226 Gm24297-201ENSMUST00000158300 68 ntBASIC-0.86□□□□□ -2.55
ShhQ62226 Gm21830-201ENSMUST00000178898 135 ntAPPRIS P1 TSL 5 BASIC-0.86□□□□□ -2.55
ShhQ62226 Gm24396-201ENSMUST00000116905 93 ntBASIC-0.87□□□□□ -2.55
ShhQ62226 Gm22313-201ENSMUST00000158008 129 ntBASIC-0.87□□□□□ -2.55
ShhQ62226 Gm23315-201ENSMUST00000158003 109 ntBASIC-0.88□□□□□ -2.55
ShhQ62226 Gm22464-201ENSMUST00000175273 64 ntBASIC-0.88□□□□□ -2.55
ShhQ62226 Mir125b-1-201ENSMUST00000175613 77 ntBASIC-0.88□□□□□ -2.55
ShhQ62226 Mir451b-201ENSMUST00000196157 72 ntBASIC-0.88□□□□□ -2.55
ShhQ62226 Gm24459-201ENSMUST00000082730 86 ntBASIC-0.88□□□□□ -2.55
ShhQ62226 Gm23316-201ENSMUST00000157997 114 ntBASIC-0.89□□□□□ -2.55
ShhQ62226 Gm22446-201ENSMUST00000180108 104 ntBASIC-0.89□□□□□ -2.55
ShhQ62226 Gm22056-201ENSMUST00000083386 81 ntBASIC-0.89□□□□□ -2.55
ShhQ62226 Traj33-201ENSMUST00000103708 57 ntAPPRIS P1 BASIC-0.91□□□□□ -2.56
ShhQ62226 Gm22783-201ENSMUST00000104089 107 ntBASIC-0.91□□□□□ -2.56
ShhQ62226 Snord58b-201ENSMUST00000082937 66 ntBASIC-0.91□□□□□ -2.56
ShhQ62226 Gm24710-201ENSMUST00000175235 101 ntBASIC-0.92□□□□□ -2.56
ShhQ62226 Gm25950-201ENSMUST00000175331 100 ntBASIC-0.92□□□□□ -2.56
ShhQ62226 Gm24135-201ENSMUST00000179085 101 ntBASIC-0.92□□□□□ -2.56
ShhQ62226 Mir7015-201ENSMUST00000199525 64 ntBASIC-0.92□□□□□ -2.56
ShhQ62226 Gm24554-201ENSMUST00000158654 73 ntBASIC-0.93□□□□□ -2.56
ShhQ62226 Gm26227-201ENSMUST00000082510 101 ntBASIC-0.93□□□□□ -2.56
ShhQ62226 Gm24097-201ENSMUST00000178720 107 ntBASIC-0.94□□□□□ -2.56
ShhQ62226 Gm27366-201ENSMUST00000184967 108 ntBASIC-0.95□□□□□ -2.56
ShhQ62226 Gm22232-201ENSMUST00000104654 94 ntBASIC-0.96□□□□□ -2.56
ShhQ62226 Gm26472-201ENSMUST00000116760 83 ntBASIC-0.96□□□□□ -2.56
ShhQ62226 Gm22540-201ENSMUST00000158168 117 ntBASIC-0.97□□□□□ -2.56
ShhQ62226 Gm22879-201ENSMUST00000082895 74 ntBASIC-0.97□□□□□ -2.56
ShhQ62226 Gm22573-201ENSMUST00000082982 102 ntBASIC-0.97□□□□□ -2.56
ShhQ62226 n-R5s153-201ENSMUST00000083451 116 ntBASIC-0.97□□□□□ -2.56
ShhQ62226 Gm22430-201ENSMUST00000158546 107 ntBASIC-0.98□□□□□ -2.57
ShhQ62226 Gm24502-201ENSMUST00000158453 105 ntBASIC-1.02□□□□□ -2.57
ShhQ62226 Mir7086-201ENSMUST00000183683 65 ntBASIC-1.02□□□□□ -2.57
ShhQ62226 Gm25143-201ENSMUST00000082696 109 ntBASIC-1.02□□□□□ -2.57
ShhQ62226 Gm26259-201ENSMUST00000104778 97 ntBASIC-1.04□□□□□ -2.58
ShhQ62226 Gm26122-201ENSMUST00000083362 82 ntBASIC-1.04□□□□□ -2.58
ShhQ62226 Mir466o-201ENSMUST00000104832 84 ntBASIC-1.05□□□□□ -2.58
ShhQ62226 Gm26125-201ENSMUST00000083357 107 ntBASIC-1.05□□□□□ -2.58
ShhQ62226 Mir297a-3-201ENSMUST00000103768 102 ntBASIC-1.06□□□□□ -2.58
ShhQ62226 Gm25601-201ENSMUST00000158356 105 ntBASIC-1.06□□□□□ -2.58
ShhQ62226 Gm24387-201ENSMUST00000104625 90 ntBASIC-1.07□□□□□ -2.58
ShhQ62226 Gm23428-201ENSMUST00000122488 102 ntBASIC-1.08□□□□□ -2.58
ShhQ62226 Gm22550-201ENSMUST00000179774 107 ntBASIC-1.08□□□□□ -2.58
ShhQ62226 Gm22060-201ENSMUST00000082558 107 ntBASIC-1.08□□□□□ -2.58
ShhQ62226 Gm22301-201ENSMUST00000082656 107 ntBASIC-1.08□□□□□ -2.58
ShhQ62226 Mir470-201ENSMUST00000093565 75 ntBASIC-1.08□□□□□ -2.58
ShhQ62226 Gm24016-201ENSMUST00000157726 68 ntBASIC-1.12□□□□□ -2.59
ShhQ62226 Gm25524-201ENSMUST00000101821 107 ntBASIC-1.13□□□□□ -2.59
ShhQ62226 Gm22127-201ENSMUST00000083239 106 ntBASIC-1.13□□□□□ -2.59
ShhQ62226 Mir466b-2-201ENSMUST00000103778 82 ntBASIC-1.15□□□□□ -2.59
ShhQ62226 Gm24806-201ENSMUST00000117036 90 ntBASIC-1.15□□□□□ -2.59
ShhQ62226 Mir485-201ENSMUST00000093620 73 ntBASIC-1.15□□□□□ -2.59
ShhQ62226 Gm25705-201ENSMUST00000083119 104 ntBASIC-1.16□□□□□ -2.6
ShhQ62226 Gm22925-201ENSMUST00000174956 102 ntBASIC-1.17□□□□□ -2.6
ShhQ62226 Mir7670-201ENSMUST00000183689 69 ntBASIC-1.18□□□□□ -2.6
ShhQ62226 Gm44377-201ENSMUST00000199039 87 ntBASIC-1.18□□□□□ -2.6
ShhQ62226 Mir493-201ENSMUST00000103837 83 ntBASIC-1.19□□□□□ -2.6
ShhQ62226 Gm26306-201ENSMUST00000157773 119 ntBASIC-1.19□□□□□ -2.6
ShhQ62226 Mir664-201ENSMUST00000196796 69 ntBASIC-1.19□□□□□ -2.6
ShhQ62226 Gm23556-201ENSMUST00000157821 92 ntBASIC-1.2□□□□□ -2.6
ShhQ62226 Gm22296-201ENSMUST00000083310 103 ntBASIC-1.2□□□□□ -2.6
ShhQ62226 Gm27935-201ENSMUST00000183894 79 ntBASIC-1.22□□□□□ -2.6
ShhQ62226 Mir124a-1-201ENSMUST00000083663 85 ntBASIC-1.22□□□□□ -2.6
ShhQ62226 Gm44303-201ENSMUST00000196348 83 ntBASIC-1.24□□□□□ -2.61
ShhQ62226 Mir7681-201ENSMUST00000184834 72 ntBASIC-1.25□□□□□ -2.61
ShhQ62226 Gm44351-201ENSMUST00000200090 95 ntBASIC-1.26□□□□□ -2.61
ShhQ62226 Gm24185-201ENSMUST00000122578 105 ntBASIC-1.27□□□□□ -2.61
ShhQ62226 Gm24631-201ENSMUST00000122765 81 ntBASIC-1.27□□□□□ -2.61
ShhQ62226 Gm23751-201ENSMUST00000157583 136 ntBASIC-1.27□□□□□ -2.61
ShhQ62226 Gm24531-201ENSMUST00000157945 100 ntBASIC-1.27□□□□□ -2.61
ShhQ62226 Gm23707-201ENSMUST00000104366 125 ntBASIC-1.28□□□□□ -2.61
ShhQ62226 Mir669m-2-201ENSMUST00000158355 98 ntBASIC-1.28□□□□□ -2.61
ShhQ62226 Gm23566-201ENSMUST00000174907 108 ntBASIC-1.28□□□□□ -2.61
ShhQ62226 Gm22183-201ENSMUST00000175420 73 ntBASIC-1.28□□□□□ -2.61
ShhQ62226 Gm25132-201ENSMUST00000082652 107 ntBASIC-1.28□□□□□ -2.61
ShhQ62226 Mir467e-201ENSMUST00000103760 87 ntBASIC-1.3□□□□□ -2.62
ShhQ62226 Gm26231-201ENSMUST00000175218 67 ntBASIC-1.3□□□□□ -2.62
ShhQ62226 Gm27995-201ENSMUST00000184402 100 ntBASIC-1.31□□□□□ -2.62
ShhQ62226 Gm27882-201ENSMUST00000184904 74 ntBASIC-1.31□□□□□ -2.62
ShhQ62226 Gm22402-201ENSMUST00000174920 110 ntBASIC-1.32□□□□□ -2.62
ShhQ62226 Gm23421-201ENSMUST00000158934 104 ntBASIC-1.33□□□□□ -2.62
ShhQ62226 Mir6395-201ENSMUST00000183885 91 ntBASIC-1.35□□□□□ -2.63
ShhQ62226 Gm23066-201ENSMUST00000158237 71 ntBASIC-1.36□□□□□ -2.63
ShhQ62226 Gm24194-201ENSMUST00000116805 90 ntBASIC-1.37□□□□□ -2.63
ShhQ62226 Gm25867-201ENSMUST00000158254 103 ntBASIC-1.37□□□□□ -2.63
ShhQ62226 Traj29-201ENSMUST00000103712 60 ntAPPRIS P1 BASIC-1.38□□□□□ -2.63
Retrieved 100 of 76,532 protein–RNA pairs in 248.7 ms