Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Mir7057-201ENSMUST00000184685 58 ntBASIC-0.4□□□□□ -2.47
Rnf40Q3U319 Mir664-201ENSMUST00000196796 69 ntBASIC-0.4□□□□□ -2.47
Rnf40Q3U319 n-R5s8-201ENSMUST00000104121 118 ntBASIC-0.41□□□□□ -2.48
Rnf40Q3U319 Gm26233-201ENSMUST00000175530 70 ntBASIC-0.44□□□□□ -2.48
Rnf40Q3U319 Gm23556-201ENSMUST00000157821 92 ntBASIC-0.45□□□□□ -2.48
Rnf40Q3U319 Gm26124-201ENSMUST00000083359 108 ntBASIC-0.47□□□□□ -2.48
Rnf40Q3U319 Mir1912-201ENSMUST00000175298 87 ntBASIC-0.49□□□□□ -2.49
Rnf40Q3U319 Gm23199-201ENSMUST00000158812 107 ntBASIC-0.5□□□□□ -2.49
Rnf40Q3U319 Mir302c-201ENSMUST00000083548 68 ntBASIC-0.5□□□□□ -2.49
Rnf40Q3U319 Snord123-201ENSMUST00000158692 71 ntBASIC-0.53□□□□□ -2.49
Rnf40Q3U319 Mir344h-1-201ENSMUST00000174922 60 ntBASIC-0.53□□□□□ -2.49
Rnf40Q3U319 Mir344h-2-201ENSMUST00000175612 60 ntBASIC-0.53□□□□□ -2.49
Rnf40Q3U319 Mir574-201ENSMUST00000103854 78 ntBASIC-0.54□□□□□ -2.5
Rnf40Q3U319 Gm22573-201ENSMUST00000082982 102 ntBASIC-0.54□□□□□ -2.5
Rnf40Q3U319 Mir466m-201ENSMUST00000175052 84 ntBASIC-0.55□□□□□ -2.5
Rnf40Q3U319 Gm17522-202ENSMUST00000186631 174 ntTSL 1 (best) BASIC-0.55□□□□□ -2.5
Rnf40Q3U319 Gm17412-202ENSMUST00000189566 174 ntTSL 1 (best) BASIC-0.55□□□□□ -2.5
Rnf40Q3U319 Gm26131-201ENSMUST00000082725 110 ntBASIC-0.55□□□□□ -2.5
Rnf40Q3U319 Mir183-201ENSMUST00000083685 70 ntBASIC-0.55□□□□□ -2.5
Rnf40Q3U319 Gm27610-201ENSMUST00000184026 74 ntBASIC-0.56□□□□□ -2.5
Rnf40Q3U319 Gm44311-201ENSMUST00000196448 69 ntBASIC-0.56□□□□□ -2.5
Rnf40Q3U319 Gm43943-201ENSMUST00000204201 113 ntBASIC-0.56□□□□□ -2.5
Rnf40Q3U319 Mir5124b-201ENSMUST00000184251 85 ntBASIC-0.58□□□□□ -2.5
Rnf40Q3U319 Mir103-1-201ENSMUST00000083619 86 ntBASIC-0.58□□□□□ -2.5
Rnf40Q3U319 Gm22234-201ENSMUST00000174906 65 ntBASIC-0.61□□□□□ -2.51
Rnf40Q3U319 Gm22783-201ENSMUST00000104089 107 ntBASIC-0.63□□□□□ -2.51
Rnf40Q3U319 Mir669m-1-201ENSMUST00000158945 98 ntBASIC-0.63□□□□□ -2.51
Rnf40Q3U319 Gm27884-201ENSMUST00000183865 76 ntBASIC-0.64□□□□□ -2.51
Rnf40Q3U319 Gm27366-201ENSMUST00000184967 108 ntBASIC-0.64□□□□□ -2.51
Rnf40Q3U319 Gm25248-201ENSMUST00000175473 98 ntBASIC-0.65□□□□□ -2.51
Rnf40Q3U319 Mir148a-201ENSMUST00000083571 99 ntBASIC-0.65□□□□□ -2.51
Rnf40Q3U319 Gm22813-202ENSMUST00000200346 124 ntBASIC-0.66□□□□□ -2.52
Rnf40Q3U319 Gm23974-201ENSMUST00000083321 131 ntBASIC-0.66□□□□□ -2.52
Rnf40Q3U319 Mir145b-201ENSMUST00000184434 75 ntBASIC-0.7□□□□□ -2.52
Rnf40Q3U319 Gm24091-201ENSMUST00000082550 83 ntBASIC-0.71□□□□□ -2.52
Rnf40Q3U319 Gm23711-201ENSMUST00000083856 83 ntBASIC-0.71□□□□□ -2.52
Rnf40Q3U319 Mir466b-2-201ENSMUST00000103778 82 ntBASIC-0.74□□□□□ -2.53
Rnf40Q3U319 Gm24047-201ENSMUST00000102405 104 ntBASIC-0.75□□□□□ -2.53
Rnf40Q3U319 Gm23831-201ENSMUST00000158895 85 ntBASIC-0.75□□□□□ -2.53
Rnf40Q3U319 Gm24704-201ENSMUST00000093715 107 ntBASIC-0.75□□□□□ -2.53
Rnf40Q3U319 Mir6961-201ENSMUST00000183874 67 ntBASIC-0.77□□□□□ -2.53
Rnf40Q3U319 Mir7043-201ENSMUST00000184219 70 ntBASIC-0.78□□□□□ -2.53
Rnf40Q3U319 Gm24108-201ENSMUST00000175495 77 ntBASIC-0.8□□□□□ -2.54
Rnf40Q3U319 Mir3101-201ENSMUST00000175607 88 ntBASIC-0.81□□□□□ -2.54
Rnf40Q3U319 Gm23216-201ENSMUST00000179545 107 ntBASIC-0.81□□□□□ -2.54
Rnf40Q3U319 Gm22464-201ENSMUST00000175273 64 ntBASIC-0.82□□□□□ -2.54
Rnf40Q3U319 Gm25521-201ENSMUST00000158393 108 ntBASIC-0.84□□□□□ -2.54
Rnf40Q3U319 Mir543-201ENSMUST00000102286 76 ntBASIC-0.89□□□□□ -2.55
Rnf40Q3U319 Gm25601-201ENSMUST00000158356 105 ntBASIC-0.92□□□□□ -2.56
Rnf40Q3U319 Gm22938-201ENSMUST00000103956 120 ntBASIC-0.94□□□□□ -2.56
Rnf40Q3U319 Gm23812-201ENSMUST00000175156 84 ntBASIC-0.95□□□□□ -2.56
Rnf40Q3U319 Gm23374-201ENSMUST00000175408 84 ntBASIC-0.95□□□□□ -2.56
Rnf40Q3U319 Mir7055-201ENSMUST00000197423 59 ntBASIC-0.95□□□□□ -2.56
Rnf40Q3U319 Gm23428-201ENSMUST00000122488 102 ntBASIC-0.96□□□□□ -2.56
Rnf40Q3U319 Mir6964-201ENSMUST00000200252 59 ntBASIC-0.96□□□□□ -2.56
Rnf40Q3U319 Gm22296-201ENSMUST00000083310 103 ntBASIC-0.96□□□□□ -2.56
Rnf40Q3U319 Mir379-201ENSMUST00000083564 66 ntBASIC-0.97□□□□□ -2.56
Rnf40Q3U319 Gm25867-201ENSMUST00000158254 103 ntBASIC-0.98□□□□□ -2.57
Rnf40Q3U319 Gm24197-201ENSMUST00000175085 109 ntBASIC-1.01□□□□□ -2.57
Rnf40Q3U319 Gm21830-201ENSMUST00000178898 135 ntAPPRIS P1 TSL 5 BASIC-1.01□□□□□ -2.57
Rnf40Q3U319 Gm25254-201ENSMUST00000157239 104 ntBASIC-1.02□□□□□ -2.57
Rnf40Q3U319 Mir493-201ENSMUST00000103837 83 ntBASIC-1.05□□□□□ -2.58
Rnf40Q3U319 Mirlet7b-201ENSMUST00000083630 85 ntBASIC-1.05□□□□□ -2.58
Rnf40Q3U319 Gm26043-201ENSMUST00000116912 91 ntBASIC-1.13□□□□□ -2.59
Rnf40Q3U319 Gm27944-201ENSMUST00000185155 103 ntBASIC-1.14□□□□□ -2.59
Rnf40Q3U319 Gm23613-201ENSMUST00000082596 87 ntBASIC-1.18□□□□□ -2.6
Rnf40Q3U319 Snord8-201ENSMUST00000175303 110 ntBASIC-1.19□□□□□ -2.6
Rnf40Q3U319 Mir6339-201ENSMUST00000185120 117 ntBASIC-1.24□□□□□ -2.61
Rnf40Q3U319 Gm25626-201ENSMUST00000177631 107 ntBASIC-1.25□□□□□ -2.61
Rnf40Q3U319 Gm26008-201ENSMUST00000158797 99 ntBASIC-1.26□□□□□ -2.61
Rnf40Q3U319 Mirlet7a-2-201ENSMUST00000175029 96 ntBASIC-1.27□□□□□ -2.61
Rnf40Q3U319 Gm22446-201ENSMUST00000180108 104 ntBASIC-1.27□□□□□ -2.61
Rnf40Q3U319 Gm24016-201ENSMUST00000157726 68 ntBASIC-1.28□□□□□ -2.61
Rnf40Q3U319 Gm23316-201ENSMUST00000157997 114 ntBASIC-1.28□□□□□ -2.61
Rnf40Q3U319 Gm26122-201ENSMUST00000083362 82 ntBASIC-1.28□□□□□ -2.61
Rnf40Q3U319 Mir124a-1-201ENSMUST00000083663 85 ntBASIC-1.29□□□□□ -2.62
Rnf40Q3U319 Gm27882-201ENSMUST00000184904 74 ntBASIC-1.31□□□□□ -2.62
Rnf40Q3U319 n-R5s153-201ENSMUST00000083451 116 ntBASIC-1.33□□□□□ -2.62
Rnf40Q3U319 Mir122-201ENSMUST00000083468 66 ntBASIC-1.33□□□□□ -2.62
Rnf40Q3U319 Gm23335-201ENSMUST00000117021 90 ntBASIC-1.37□□□□□ -2.63
Rnf40Q3U319 Mir451b-201ENSMUST00000196157 72 ntBASIC-1.38□□□□□ -2.63
Rnf40Q3U319 Mir297a-3-201ENSMUST00000103768 102 ntBASIC-1.41□□□□□ -2.64
Rnf40Q3U319 Gm24631-201ENSMUST00000122765 81 ntBASIC-1.41□□□□□ -2.64
Rnf40Q3U319 Gm23707-201ENSMUST00000104366 125 ntBASIC-1.43□□□□□ -2.64
Rnf40Q3U319 Gm24554-201ENSMUST00000158654 73 ntBASIC-1.47□□□□□ -2.64
Rnf40Q3U319 Mir7015-201ENSMUST00000199525 64 ntBASIC-1.48□□□□□ -2.65
Rnf40Q3U319 Gm27671-201ENSMUST00000183739 66 ntBASIC-1.52□□□□□ -2.65
Rnf40Q3U319 Gm24806-201ENSMUST00000117036 90 ntBASIC-1.53□□□□□ -2.65
Rnf40Q3U319 Mir7086-201ENSMUST00000183683 65 ntBASIC-1.53□□□□□ -2.65
Rnf40Q3U319 Traj33-201ENSMUST00000103708 57 ntAPPRIS P1 BASIC-1.55□□□□□ -2.66
Rnf40Q3U319 Gm24185-201ENSMUST00000122578 105 ntBASIC-1.55□□□□□ -2.66
Rnf40Q3U319 Gm22430-201ENSMUST00000158546 107 ntBASIC-1.55□□□□□ -2.66
Rnf40Q3U319 Mir466o-201ENSMUST00000104832 84 ntBASIC-1.58□□□□□ -2.66
Rnf40Q3U319 Gm23066-201ENSMUST00000158237 71 ntBASIC-1.59□□□□□ -2.66
Rnf40Q3U319 Mir7670-201ENSMUST00000183689 69 ntBASIC-1.61□□□□□ -2.67
Rnf40Q3U319 Mir470-201ENSMUST00000093565 75 ntBASIC-1.61□□□□□ -2.67
Rnf40Q3U319 Gm23421-201ENSMUST00000158934 104 ntBASIC-1.63□□□□□ -2.67
Rnf40Q3U319 Gm26125-201ENSMUST00000083357 107 ntBASIC-1.63□□□□□ -2.67
Rnf40Q3U319 Mir1906-1-201ENSMUST00000122586 80 ntBASIC-1.67□□□□□ -2.68
Rnf40Q3U319 Mir1906-2-201ENSMUST00000122610 80 ntBASIC-1.67□□□□□ -2.68
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms