Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Snord67-201ENSMUST00000104033 111 ntBASIC0.17□□□□□ -2.38
ShhQ62226 Gm23652-201ENSMUST00000116752 107 ntBASIC0.17□□□□□ -2.38
ShhQ62226 Gm25952-201ENSMUST00000175329 74 ntBASIC0.17□□□□□ -2.38
ShhQ62226 Gm45617-201ENSMUST00000211132 209 ntBASIC0.17□□□□□ -2.38
ShhQ62226 Gm14947-201ENSMUST00000133704 303 ntBASIC0.16□□□□□ -2.38
ShhQ62226 Gm44328-201ENSMUST00000199331 75 ntBASIC0.16□□□□□ -2.38
ShhQ62226 mt-Tw-201ENSMUST00000082397 67 ntBASIC0.16□□□□□ -2.38
ShhQ62226 Gm22454-201ENSMUST00000082583 107 ntBASIC0.16□□□□□ -2.38
ShhQ62226 Gm25791-201ENSMUST00000083292 137 ntBASIC0.16□□□□□ -2.38
ShhQ62226 Traj53-201ENSMUST00000103690 66 ntAPPRIS P1 BASIC0.15□□□□□ -2.39
ShhQ62226 Gm26359-201ENSMUST00000158873 101 ntBASIC0.15□□□□□ -2.39
ShhQ62226 Gm44932-201ENSMUST00000206799 121 ntBASIC0.15□□□□□ -2.39
ShhQ62226 Gm22950-201ENSMUST00000082776 107 ntBASIC0.15□□□□□ -2.39
ShhQ62226 Gm25772-201ENSMUST00000158574 56 ntBASIC0.14□□□□□ -2.39
ShhQ62226 Gm45688-201ENSMUST00000210002 101 ntBASIC0.14□□□□□ -2.39
ShhQ62226 mt-Tl1-201ENSMUST00000082391 75 ntBASIC0.14□□□□□ -2.39
ShhQ62226 Gm25798-201ENSMUST00000082641 107 ntBASIC0.14□□□□□ -2.39
ShhQ62226 Gm25022-201ENSMUST00000102205 83 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Mir467a-6-201ENSMUST00000177790 83 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Mir467a-3-201ENSMUST00000178082 83 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Mir467a-7-201ENSMUST00000178635 83 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Mir467a-10-201ENSMUST00000179320 83 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Mir467a-5-201ENSMUST00000179352 83 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Mir467a-2-201ENSMUST00000179447 83 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Mir467a-9-201ENSMUST00000179752 83 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Mir467a-4-201ENSMUST00000179923 83 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Mir467a-8-201ENSMUST00000180070 83 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Mir191-201ENSMUST00000196210 74 ntBASIC0.13□□□□□ -2.39
ShhQ62226 CT571266.1-201ENSMUST00000222859 153 ntBASIC0.13□□□□□ -2.39
ShhQ62226 Gm25619-201ENSMUST00000122621 104 ntBASIC0.12□□□□□ -2.39
ShhQ62226 Gm27549-201ENSMUST00000183508 62 ntBASIC0.12□□□□□ -2.39
ShhQ62226 Mir6915-201ENSMUST00000198839 69 ntBASIC0.12□□□□□ -2.39
ShhQ62226 Gm25296-201ENSMUST00000082566 67 ntBASIC0.12□□□□□ -2.39
ShhQ62226 Gm24796-201ENSMUST00000104007 107 ntBASIC0.11□□□□□ -2.39
ShhQ62226 Gm25309-201ENSMUST00000116728 126 ntBASIC0.11□□□□□ -2.39
ShhQ62226 Mir126a-201ENSMUST00000083606 73 ntBASIC0.11□□□□□ -2.39
ShhQ62226 Gm24218-201ENSMUST00000180163 105 ntBASIC0.1□□□□□ -2.39
ShhQ62226 Gm24134-201ENSMUST00000083361 71 ntBASIC0.1□□□□□ -2.39
ShhQ62226 Mirlet7d-201ENSMUST00000083519 103 ntBASIC0.1□□□□□ -2.39
ShhQ62226 Gm25609-201ENSMUST00000104019 104 ntBASIC0.09□□□□□ -2.4
ShhQ62226 Gm24868-201ENSMUST00000157265 136 ntBASIC0.09□□□□□ -2.4
ShhQ62226 Gm22077-201ENSMUST00000157594 93 ntBASIC0.09□□□□□ -2.4
ShhQ62226 Gm24199-201ENSMUST00000157808 136 ntBASIC0.09□□□□□ -2.4
ShhQ62226 Gm24077-201ENSMUST00000158183 136 ntBASIC0.09□□□□□ -2.4
ShhQ62226 Ranbp2-ps1-201ENSMUST00000184001 403 ntBASIC0.09□□□□□ -2.4
ShhQ62226 Gm37750-201ENSMUST00000193563 129 ntBASIC0.09□□□□□ -2.4
ShhQ62226 Mir327-201ENSMUST00000199328 69 ntBASIC0.09□□□□□ -2.4
ShhQ62226 Gm22805-201ENSMUST00000082739 107 ntBASIC0.09□□□□□ -2.4
ShhQ62226 Mir382-201ENSMUST00000083494 76 ntBASIC0.09□□□□□ -2.4
ShhQ62226 Gm22757-201ENSMUST00000102279 96 ntBASIC0.08□□□□□ -2.4
ShhQ62226 Gm25112-201ENSMUST00000122680 104 ntBASIC0.08□□□□□ -2.4
ShhQ62226 Gm26104-201ENSMUST00000157250 108 ntBASIC0.08□□□□□ -2.4
ShhQ62226 Gm22327-201ENSMUST00000158899 108 ntBASIC0.08□□□□□ -2.4
ShhQ62226 Gm22455-201ENSMUST00000082580 71 ntBASIC0.08□□□□□ -2.4
ShhQ62226 n-R5s171-201ENSMUST00000104128 79 ntBASIC0.07□□□□□ -2.4
ShhQ62226 Gm25964-201ENSMUST00000157171 97 ntBASIC0.07□□□□□ -2.4
ShhQ62226 Gm25440-201ENSMUST00000158279 154 ntBASIC0.07□□□□□ -2.4
ShhQ62226 Gm45655-201ENSMUST00000211625 160 ntBASIC0.07□□□□□ -2.4
ShhQ62226 AC129019.2-201ENSMUST00000222063 202 ntBASIC0.07□□□□□ -2.4
ShhQ62226 Gm22368-201ENSMUST00000102416 109 ntBASIC0.06□□□□□ -2.4
ShhQ62226 Gm25275-201ENSMUST00000104297 129 ntBASIC0.06□□□□□ -2.4
ShhQ62226 Snord50a-201ENSMUST00000178154 72 ntBASIC0.06□□□□□ -2.4
ShhQ62226 Gm24463-201ENSMUST00000178417 72 ntBASIC0.06□□□□□ -2.4
ShhQ62226 Gm22458-201ENSMUST00000082576 107 ntBASIC0.05□□□□□ -2.4
ShhQ62226 Snord85-201ENSMUST00000083262 73 ntBASIC0.05□□□□□ -2.4
ShhQ62226 Mir672-201ENSMUST00000102331 100 ntBASIC0.04□□□□□ -2.4
ShhQ62226 Gm25061-201ENSMUST00000104665 107 ntBASIC0.04□□□□□ -2.4
ShhQ62226 Gm25542-201ENSMUST00000116889 94 ntBASIC0.04□□□□□ -2.4
ShhQ62226 Mir466m-201ENSMUST00000175052 84 ntBASIC0.04□□□□□ -2.4
ShhQ62226 Gm23159-201ENSMUST00000175088 77 ntBASIC0.04□□□□□ -2.4
ShhQ62226 Snora26-201ENSMUST00000175614 121 ntBASIC0.04□□□□□ -2.4
ShhQ62226 Gm38208-201ENSMUST00000192476 114 ntBASIC0.04□□□□□ -2.4
ShhQ62226 Gm25644-201ENSMUST00000083209 107 ntBASIC0.04□□□□□ -2.4
ShhQ62226 Gm22489-201ENSMUST00000116813 62 ntBASIC0.03□□□□□ -2.4
ShhQ62226 Gm24064-201ENSMUST00000157486 106 ntBASIC0.03□□□□□ -2.4
ShhQ62226 Gm22838-201ENSMUST00000158437 99 ntBASIC0.03□□□□□ -2.4
ShhQ62226 Mir344-2-201ENSMUST00000175446 80 ntBASIC0.03□□□□□ -2.4
ShhQ62226 Gm23442-201ENSMUST00000082919 134 ntBASIC0.03□□□□□ -2.4
ShhQ62226 Mir3071-201ENSMUST00000093621 80 ntBASIC0.03□□□□□ -2.4
ShhQ62226 Gm22087-201ENSMUST00000158339 88 ntBASIC0.02□□□□□ -2.41
ShhQ62226 Gm27937-201ENSMUST00000183605 88 ntBASIC0.02□□□□□ -2.41
ShhQ62226 Mir7673-201ENSMUST00000184567 64 ntBASIC0.02□□□□□ -2.41
ShhQ62226 Gm25703-201ENSMUST00000083123 151 ntBASIC0.02□□□□□ -2.41
ShhQ62226 Gm25522-201ENSMUST00000158394 105 ntBASIC0.01□□□□□ -2.41
ShhQ62226 Gm22413-201ENSMUST00000175465 85 ntBASIC0.01□□□□□ -2.41
ShhQ62226 Gm25740-201ENSMUST00000180247 107 ntBASIC0.01□□□□□ -2.41
ShhQ62226 Gm26499-201ENSMUST00000178544 79 ntBASIC0□□□□□ -2.41
ShhQ62226 Gm26096-201ENSMUST00000179084 79 ntBASIC0□□□□□ -2.41
ShhQ62226 Mir7651-201ENSMUST00000184154 64 ntBASIC0□□□□□ -2.41
ShhQ62226 Gm22459-201ENSMUST00000082577 108 ntBASIC0□□□□□ -2.41
ShhQ62226 Gm25186-201ENSMUST00000083909 108 ntBASIC0□□□□□ -2.41
ShhQ62226 Mir741-201ENSMUST00000103931 71 ntBASIC-0.01□□□□□ -2.41
ShhQ62226 Gm23715-201ENSMUST00000157354 106 ntBASIC-0.01□□□□□ -2.41
ShhQ62226 Gm22942-201ENSMUST00000158563 124 ntBASIC-0.01□□□□□ -2.41
ShhQ62226 Snord49b-201ENSMUST00000082503 72 ntBASIC-0.01□□□□□ -2.41
ShhQ62226 n-R5s42-201ENSMUST00000082697 104 ntBASIC-0.01□□□□□ -2.41
ShhQ62226 Gm25854-201ENSMUST00000082792 72 ntBASIC-0.01□□□□□ -2.41
ShhQ62226 Gm24256-201ENSMUST00000083696 84 ntBASIC-0.01□□□□□ -2.41
ShhQ62226 Gm22827-201ENSMUST00000083766 107 ntBASIC-0.01□□□□□ -2.41
ShhQ62226 Gm24843-201ENSMUST00000158682 76 ntBASIC-0.03□□□□□ -2.41
Retrieved 100 of 76,532 protein–RNA pairs in 256.4 ms