Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Gm22559-201ENSMUST00000157329 134 ntBASIC1.48□□□□□ -2.17
Rnf40Q3U319 Gm22074-201ENSMUST00000158595 113 ntBASIC1.48□□□□□ -2.17
Rnf40Q3U319 Gm23494-201ENSMUST00000116830 126 ntBASIC1.47□□□□□ -2.17
Rnf40Q3U319 Mir181b-1-201ENSMUST00000083524 80 ntBASIC1.47□□□□□ -2.17
Rnf40Q3U319 Olfr1099-202ENSMUST00000213456 4867 ntAPPRIS P1 TSL 5 BASIC1.47□□□□□ -2.17
Rnf40Q3U319 Gm22761-201ENSMUST00000102278 96 ntBASIC1.46□□□□□ -2.18
Rnf40Q3U319 Gm25275-201ENSMUST00000104297 129 ntBASIC1.46□□□□□ -2.18
Rnf40Q3U319 Traj9-201ENSMUST00000103731 58 ntAPPRIS P1 BASIC1.45□□□□□ -2.18
Rnf40Q3U319 Gm22149-201ENSMUST00000104442 136 ntBASIC1.45□□□□□ -2.18
Rnf40Q3U319 Gm44483-201ENSMUST00000197203 97 ntBASIC1.45□□□□□ -2.18
Rnf40Q3U319 mt-Tw-201ENSMUST00000082397 67 ntBASIC1.45□□□□□ -2.18
Rnf40Q3U319 Tex15-201ENSMUST00000009772 8405 ntAPPRIS P1 TSL 1 (best) BASIC1.44□□□□□ -2.18
Rnf40Q3U319 Gm23558-201ENSMUST00000157823 80 ntBASIC1.44□□□□□ -2.18
Rnf40Q3U319 Gm22127-201ENSMUST00000083239 106 ntBASIC1.44□□□□□ -2.18
Rnf40Q3U319 Gm24902-201ENSMUST00000158126 123 ntBASIC1.43□□□□□ -2.18
Rnf40Q3U319 Gm25831-201ENSMUST00000158924 163 ntBASIC1.43□□□□□ -2.18
Rnf40Q3U319 Mir3473d-201ENSMUST00000175346 81 ntBASIC1.43□□□□□ -2.18
Rnf40Q3U319 Gm27974-201ENSMUST00000183415 105 ntBASIC1.43□□□□□ -2.18
Rnf40Q3U319 Gm27943-201ENSMUST00000184844 116 ntBASIC1.43□□□□□ -2.18
Rnf40Q3U319 Gm42845-201ENSMUST00000197766 105 ntBASIC1.43□□□□□ -2.18
Rnf40Q3U319 AC117232.1-201ENSMUST00000197964 119 ntBASIC1.43□□□□□ -2.18
Rnf40Q3U319 Gm27326-201ENSMUST00000183504 95 ntBASIC1.42□□□□□ -2.18
Rnf40Q3U319 Gm22455-201ENSMUST00000082580 71 ntBASIC1.42□□□□□ -2.18
Rnf40Q3U319 Gm24865-201ENSMUST00000103246 96 ntBASIC1.41□□□□□ -2.18
Rnf40Q3U319 Mir148b-201ENSMUST00000083626 97 ntBASIC1.41□□□□□ -2.18
Rnf40Q3U319 Gm8251-201ENSMUST00000168641 5985 ntAPPRIS P1 BASIC1.4□□□□□ -2.19
Rnf40Q3U319 Gm22302-201ENSMUST00000082657 106 ntBASIC1.4□□□□□ -2.19
Rnf40Q3U319 Gm22303-201ENSMUST00000082686 122 ntBASIC1.4□□□□□ -2.19
Rnf40Q3U319 Mir33-201ENSMUST00000083531 69 ntBASIC1.39□□□□□ -2.19
Rnf40Q3U319 Olfr867-203ENSMUST00000216538 4617 ntAPPRIS P1 TSL 5 BASIC1.38□□□□□ -2.19
Rnf40Q3U319 Gm23020-201ENSMUST00000158766 253 ntBASIC1.38□□□□□ -2.19
Rnf40Q3U319 Gm44455-201ENSMUST00000200061 82 ntBASIC1.38□□□□□ -2.19
Rnf40Q3U319 Gm45741-201ENSMUST00000212661 152 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
Rnf40Q3U319 Mir101a-201ENSMUST00000083517 83 ntBASIC1.37□□□□□ -2.19
Rnf40Q3U319 Gm23060-201ENSMUST00000102345 109 ntBASIC1.36□□□□□ -2.19
Rnf40Q3U319 Snord67-201ENSMUST00000104033 111 ntBASIC1.36□□□□□ -2.19
Rnf40Q3U319 Gm12432-201ENSMUST00000119540 186 ntBASIC1.36□□□□□ -2.19
Rnf40Q3U319 Gm24379-201ENSMUST00000122695 86 ntBASIC1.36□□□□□ -2.19
Rnf40Q3U319 Snora62-201ENSMUST00000082991 149 ntBASIC1.36□□□□□ -2.19
Rnf40Q3U319 Mir320-201ENSMUST00000083594 82 ntBASIC1.36□□□□□ -2.19
Rnf40Q3U319 Gm10974-201ENSMUST00000107486 126 ntAPPRIS P1 TSL 5 BASIC1.35□□□□□ -2.19
Rnf40Q3U319 Gm23787-201ENSMUST00000122538 73 ntBASIC1.35□□□□□ -2.19
Rnf40Q3U319 Gm25768-201ENSMUST00000158570 98 ntBASIC1.35□□□□□ -2.19
Rnf40Q3U319 Gm26082-201ENSMUST00000104070 127 ntBASIC1.34□□□□□ -2.19
Rnf40Q3U319 Gm24297-201ENSMUST00000158300 68 ntBASIC1.34□□□□□ -2.19
Rnf40Q3U319 Mir6962-201ENSMUST00000199512 63 ntBASIC1.34□□□□□ -2.19
Rnf40Q3U319 Gm22485-201ENSMUST00000157990 109 ntBASIC1.33□□□□□ -2.2
Rnf40Q3U319 Gm25522-201ENSMUST00000158394 105 ntBASIC1.33□□□□□ -2.2
Rnf40Q3U319 Mir7665-201ENSMUST00000184907 63 ntBASIC1.33□□□□□ -2.2
Rnf40Q3U319 Gm44345-201ENSMUST00000199560 135 ntBASIC1.33□□□□□ -2.2
Rnf40Q3U319 Gm23347-201ENSMUST00000083823 82 ntBASIC1.33□□□□□ -2.2
Rnf40Q3U319 Gm23122-201ENSMUST00000157645 103 ntBASIC1.32□□□□□ -2.2
Rnf40Q3U319 Mir1955-201ENSMUST00000158014 98 ntBASIC1.32□□□□□ -2.2
Rnf40Q3U319 Gm26363-201ENSMUST00000158866 83 ntBASIC1.32□□□□□ -2.2
Rnf40Q3U319 DQ267101-201ENSMUST00000082562 73 ntBASIC1.32□□□□□ -2.2
Rnf40Q3U319 Gm43911-201ENSMUST00000203097 76 ntBASIC1.31□□□□□ -2.2
Rnf40Q3U319 Mir448-201ENSMUST00000083516 112 ntBASIC1.31□□□□□ -2.2
Rnf40Q3U319 Gm25779-201ENSMUST00000116710 95 ntBASIC1.3□□□□□ -2.2
Rnf40Q3U319 Mir3105-201ENSMUST00000175480 85 ntBASIC1.3□□□□□ -2.2
Rnf40Q3U319 Snord32a-201ENSMUST00000083285 83 ntBASIC1.3□□□□□ -2.2
Rnf40Q3U319 Mir200a-201ENSMUST00000083466 90 ntBASIC1.3□□□□□ -2.2
Rnf40Q3U319 Gm26484-201ENSMUST00000158018 106 ntBASIC1.29□□□□□ -2.2
Rnf40Q3U319 Mir3968-201ENSMUST00000175355 100 ntBASIC1.29□□□□□ -2.2
Rnf40Q3U319 Ighv1-23-201ENSMUST00000194625 351 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
Rnf40Q3U319 Mirlet7g-201ENSMUST00000083506 88 ntBASIC1.29□□□□□ -2.2
Rnf40Q3U319 Vmn1r73-202ENSMUST00000226516 6155 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
Rnf40Q3U319 Gm24678-201ENSMUST00000158756 104 ntBASIC1.28□□□□□ -2.2
Rnf40Q3U319 Mir6364-201ENSMUST00000183396 86 ntBASIC1.28□□□□□ -2.2
Rnf40Q3U319 Mir1904-201ENSMUST00000122702 80 ntBASIC1.27□□□□□ -2.21
Rnf40Q3U319 Gm22431-201ENSMUST00000158545 107 ntBASIC1.27□□□□□ -2.21
Rnf40Q3U319 Mir8119-201ENSMUST00000183371 129 ntBASIC1.27□□□□□ -2.21
Rnf40Q3U319 Mir211-201ENSMUST00000083651 106 ntBASIC1.27□□□□□ -2.21
Rnf40Q3U319 Gm24278-201ENSMUST00000104239 127 ntBASIC1.26□□□□□ -2.21
Rnf40Q3U319 Mir6240-201ENSMUST00000184281 117 ntBASIC1.25□□□□□ -2.21
Rnf40Q3U319 Gm22980-201ENSMUST00000082608 70 ntBASIC1.25□□□□□ -2.21
Rnf40Q3U319 Snord35a-201ENSMUST00000083884 90 ntBASIC1.25□□□□□ -2.21
Rnf40Q3U319 Mir7059-201ENSMUST00000184825 59 ntBASIC1.24□□□□□ -2.21
Rnf40Q3U319 Mir7229-201ENSMUST00000197062 53 ntBASIC1.24□□□□□ -2.21
Rnf40Q3U319 Gm21961-201ENSMUST00000110100 114 ntAPPRIS P1 TSL 5 BASIC1.23□□□□□ -2.21
Rnf40Q3U319 Gm23410-201ENSMUST00000179967 107 ntBASIC1.23□□□□□ -2.21
Rnf40Q3U319 Gm22505-201ENSMUST00000082956 108 ntBASIC1.23□□□□□ -2.21
Rnf40Q3U319 Gm22363-201ENSMUST00000083100 108 ntBASIC1.23□□□□□ -2.21
Rnf40Q3U319 Gm23814-201ENSMUST00000083230 102 ntBASIC1.23□□□□□ -2.21
Rnf40Q3U319 Mir7052-201ENSMUST00000184821 65 ntBASIC1.22□□□□□ -2.21
Rnf40Q3U319 Mir343-201ENSMUST00000102360 75 ntBASIC1.21□□□□□ -2.22
Rnf40Q3U319 Gm22673-201ENSMUST00000104415 131 ntBASIC1.21□□□□□ -2.22
Rnf40Q3U319 Gm23173-201ENSMUST00000157161 160 ntBASIC1.21□□□□□ -2.22
Rnf40Q3U319 Gm23893-201ENSMUST00000158106 134 ntBASIC1.21□□□□□ -2.22
Rnf40Q3U319 Gm24884-201ENSMUST00000158784 119 ntBASIC1.21□□□□□ -2.22
Rnf40Q3U319 Mir695-201ENSMUST00000102261 109 ntBASIC1.2□□□□□ -2.22
Rnf40Q3U319 Gm23329-201ENSMUST00000157415 108 ntBASIC1.2□□□□□ -2.22
Rnf40Q3U319 Gm23328-201ENSMUST00000157418 132 ntBASIC1.2□□□□□ -2.22
Rnf40Q3U319 Mir7091-201ENSMUST00000184075 79 ntBASIC1.2□□□□□ -2.22
Rnf40Q3U319 Gm24459-201ENSMUST00000082730 86 ntBASIC1.2□□□□□ -2.22
Rnf40Q3U319 Mir363-201ENSMUST00000093598 75 ntBASIC1.2□□□□□ -2.22
Rnf40Q3U319 Mir670-201ENSMUST00000102380 100 ntBASIC1.19□□□□□ -2.22
Rnf40Q3U319 Gm23483-201ENSMUST00000104179 108 ntBASIC1.18□□□□□ -2.22
Rnf40Q3U319 Gm24777-201ENSMUST00000157644 107 ntBASIC1.18□□□□□ -2.22
Rnf40Q3U319 Gm27894-201ENSMUST00000184177 92 ntBASIC1.18□□□□□ -2.22
Rnf40Q3U319 Gm22879-201ENSMUST00000082895 74 ntBASIC1.18□□□□□ -2.22
Retrieved 100 of 76,532 protein–RNA pairs in 172.3 ms