Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Gm23012-201ENSMUST00000104149 83 ntBASIC1.38□□□□□ -2.19
RaraP11416 Gm24233-201ENSMUST00000104317 122 ntBASIC1.38□□□□□ -2.19
RaraP11416 Mir3108-201ENSMUST00000175500 79 ntBASIC1.38□□□□□ -2.19
RaraP11416 Gm27607-201ENSMUST00000185162 122 ntBASIC1.38□□□□□ -2.19
RaraP11416 Gm25128-201ENSMUST00000083339 76 ntBASIC1.38□□□□□ -2.19
RaraP11416 Gm42533-201ENSMUST00000196247 157 ntBASIC1.37□□□□□ -2.19
RaraP11416 Vmn1r73-202ENSMUST00000226516 6155 ntAPPRIS P1 BASIC1.37□□□□□ -2.19
RaraP11416 Traj53-201ENSMUST00000103690 66 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
RaraP11416 Snord13-201ENSMUST00000157627 104 ntBASIC1.36□□□□□ -2.19
RaraP11416 Gm22485-201ENSMUST00000157990 109 ntBASIC1.36□□□□□ -2.19
RaraP11416 Gm22520-201ENSMUST00000158269 129 ntBASIC1.36□□□□□ -2.19
RaraP11416 Gm25247-201ENSMUST00000175475 90 ntBASIC1.36□□□□□ -2.19
RaraP11416 Gm29432-201ENSMUST00000185397 139 ntBASIC1.36□□□□□ -2.19
RaraP11416 Mir343-201ENSMUST00000102360 75 ntBASIC1.35□□□□□ -2.19
RaraP11416 Gm44211-201ENSMUST00000204867 145 ntBASIC1.35□□□□□ -2.19
RaraP11416 Zfp654-201ENSMUST00000052588 4741 ntAPPRIS P3 TSL 1 (best) BASIC1.35□□□□□ -2.19
RaraP11416 Vmn1r75-204ENSMUST00000227611 4336 ntAPPRIS ALT2 BASIC1.34□□□□□ -2.19
RaraP11416 Gm25300-201ENSMUST00000175284 84 ntBASIC1.34□□□□□ -2.19
RaraP11416 Gm23416-201ENSMUST00000175520 95 ntBASIC1.34□□□□□ -2.19
RaraP11416 Gm45655-201ENSMUST00000211625 160 ntBASIC1.34□□□□□ -2.19
RaraP11416 Gm25497-201ENSMUST00000104425 132 ntBASIC1.33□□□□□ -2.2
RaraP11416 Gm25495-201ENSMUST00000104431 131 ntBASIC1.33□□□□□ -2.2
RaraP11416 Gm24331-201ENSMUST00000175099 67 ntBASIC1.33□□□□□ -2.2
RaraP11416 Gm23801-201ENSMUST00000175561 67 ntBASIC1.33□□□□□ -2.2
RaraP11416 Gm24485-201ENSMUST00000178283 67 ntBASIC1.33□□□□□ -2.2
RaraP11416 Mir7063-201ENSMUST00000184158 91 ntBASIC1.33□□□□□ -2.2
RaraP11416 Gm44483-201ENSMUST00000197203 97 ntBASIC1.33□□□□□ -2.2
RaraP11416 Svbp-204ENSMUST00000210595 150 ntTSL 5 BASIC1.33□□□□□ -2.2
RaraP11416 Gm25138-201ENSMUST00000083248 136 ntBASIC1.33□□□□□ -2.2
RaraP11416 Vmn1r75-202ENSMUST00000226622 6638 ntAPPRIS P2 BASIC1.32□□□□□ -2.2
RaraP11416 Gm23856-201ENSMUST00000158380 99 ntBASIC1.32□□□□□ -2.2
RaraP11416 Trgj1-201ENSMUST00000200495 60 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
RaraP11416 Snord95-201ENSMUST00000082846 68 ntBASIC1.32□□□□□ -2.2
RaraP11416 Gm26438-201ENSMUST00000082593 107 ntBASIC1.31□□□□□ -2.2
RaraP11416 Mir10b-201ENSMUST00000083566 68 ntBASIC1.31□□□□□ -2.2
RaraP11416 Gm24555-201ENSMUST00000104548 124 ntBASIC1.3□□□□□ -2.2
RaraP11416 Gm25552-201ENSMUST00000158081 91 ntBASIC1.3□□□□□ -2.2
RaraP11416 Mir15a-201ENSMUST00000175266 84 ntBASIC1.3□□□□□ -2.2
RaraP11416 Gm382-201ENSMUST00000096332 4070 ntAPPRIS P1 TSL 1 (best) BASIC1.3□□□□□ -2.2
RaraP11416 Mir297-1-201ENSMUST00000103800 76 ntBASIC1.29□□□□□ -2.2
RaraP11416 Mir669h-201ENSMUST00000116944 125 ntBASIC1.29□□□□□ -2.2
RaraP11416 Gm26363-201ENSMUST00000158866 83 ntBASIC1.29□□□□□ -2.2
RaraP11416 Mir7010-201ENSMUST00000183464 63 ntBASIC1.29□□□□□ -2.2
RaraP11416 CT030166.3-201ENSMUST00000223203 193 ntBASIC1.29□□□□□ -2.2
RaraP11416 Gm23245-201ENSMUST00000083370 135 ntBASIC1.29□□□□□ -2.2
RaraP11416 Mir3098-201ENSMUST00000175416 87 ntBASIC1.28□□□□□ -2.2
RaraP11416 Mir3070a-201ENSMUST00000175468 89 ntBASIC1.28□□□□□ -2.2
RaraP11416 Snord45b-201ENSMUST00000082797 71 ntBASIC1.28□□□□□ -2.2
RaraP11416 Mir494-201ENSMUST00000093632 85 ntBASIC1.28□□□□□ -2.2
RaraP11416 Gm21954-201ENSMUST00000179544 51 ntAPPRIS P1 TSL 5 BASIC1.27□□□□□ -2.21
RaraP11416 Gm27974-201ENSMUST00000183415 105 ntBASIC1.27□□□□□ -2.21
RaraP11416 Gm22559-201ENSMUST00000157329 134 ntBASIC1.26□□□□□ -2.21
RaraP11416 Gm22074-201ENSMUST00000158595 113 ntBASIC1.26□□□□□ -2.21
RaraP11416 Gm27554-201ENSMUST00000185074 98 ntBASIC1.26□□□□□ -2.21
RaraP11416 AC139186.1-201ENSMUST00000197610 94 ntBASIC1.26□□□□□ -2.21
RaraP11416 Gm22980-201ENSMUST00000082608 70 ntBASIC1.26□□□□□ -2.21
RaraP11416 n-R5s12-201ENSMUST00000083785 119 ntBASIC1.26□□□□□ -2.21
RaraP11416 Mir876-201ENSMUST00000104659 81 ntBASIC1.25□□□□□ -2.21
RaraP11416 Gm24396-201ENSMUST00000116905 93 ntBASIC1.25□□□□□ -2.21
RaraP11416 n-R5s6-201ENSMUST00000122663 88 ntBASIC1.25□□□□□ -2.21
RaraP11416 Gm22663-201ENSMUST00000158721 102 ntBASIC1.25□□□□□ -2.21
RaraP11416 Gm27711-201ENSMUST00000183802 118 ntBASIC1.25□□□□□ -2.21
RaraP11416 Gm24579-201ENSMUST00000103964 144 ntBASIC1.23□□□□□ -2.21
RaraP11416 Mir1904-201ENSMUST00000122702 80 ntBASIC1.23□□□□□ -2.21
RaraP11416 Gm24772-201ENSMUST00000158507 110 ntBASIC1.23□□□□□ -2.21
RaraP11416 Gm27937-201ENSMUST00000183605 88 ntBASIC1.23□□□□□ -2.21
RaraP11416 Mir7673-201ENSMUST00000184567 64 ntBASIC1.23□□□□□ -2.21
RaraP11416 Gm43885-201ENSMUST00000204928 2542 ntBASIC1.23□□□□□ -2.21
RaraP11416 Gm23126-201ENSMUST00000104260 134 ntBASIC1.22□□□□□ -2.21
RaraP11416 Gm25055-201ENSMUST00000157369 76 ntBASIC1.22□□□□□ -2.21
RaraP11416 Gm25656-201ENSMUST00000158466 66 ntBASIC1.22□□□□□ -2.21
RaraP11416 Gm25166-201ENSMUST00000158909 111 ntBASIC1.22□□□□□ -2.21
RaraP11416 Gm42677-201ENSMUST00000196363 127 ntBASIC1.22□□□□□ -2.21
RaraP11416 Mir196b-201ENSMUST00000083509 85 ntBASIC1.22□□□□□ -2.21
RaraP11416 Vmn1r-ps69-201ENSMUST00000172759 201 ntBASIC1.21□□□□□ -2.22
RaraP11416 Gm24321-201ENSMUST00000175348 80 ntBASIC1.21□□□□□ -2.22
RaraP11416 Gm27977-201ENSMUST00000185159 111 ntBASIC1.21□□□□□ -2.22
RaraP11416 Gm25894-201ENSMUST00000083458 75 ntBASIC1.21□□□□□ -2.22
RaraP11416 Mir15b-201ENSMUST00000083646 64 ntBASIC1.21□□□□□ -2.22
RaraP11416 Gm14533-201ENSMUST00000117088 93 ntBASIC1.2□□□□□ -2.22
RaraP11416 Gm24942-201ENSMUST00000158328 114 ntBASIC1.2□□□□□ -2.22
RaraP11416 Mir6904-201ENSMUST00000183443 67 ntBASIC1.2□□□□□ -2.22
RaraP11416 Gm24467-201ENSMUST00000157887 126 ntBASIC1.19□□□□□ -2.22
RaraP11416 Gm25641-201ENSMUST00000175135 108 ntBASIC1.19□□□□□ -2.22
RaraP11416 AC157278.1-201ENSMUST00000221621 148 ntBASIC1.19□□□□□ -2.22
RaraP11416 Gm22459-201ENSMUST00000082577 108 ntBASIC1.19□□□□□ -2.22
RaraP11416 Gm22780-201ENSMUST00000104084 132 ntBASIC1.18□□□□□ -2.22
RaraP11416 Gm24226-201ENSMUST00000158826 97 ntBASIC1.18□□□□□ -2.22
RaraP11416 Gm23636-201ENSMUST00000175070 95 ntBASIC1.18□□□□□ -2.22
RaraP11416 Mir5124a-201ENSMUST00000175528 72 ntBASIC1.18□□□□□ -2.22
RaraP11416 Mir6381-201ENSMUST00000183426 87 ntBASIC1.18□□□□□ -2.22
RaraP11416 Mir101a-201ENSMUST00000083517 83 ntBASIC1.18□□□□□ -2.22
RaraP11416 Mir33-201ENSMUST00000083531 69 ntBASIC1.18□□□□□ -2.22
RaraP11416 Gm22087-201ENSMUST00000158339 88 ntBASIC1.17□□□□□ -2.22
RaraP11416 Gm27980-201ENSMUST00000184094 169 ntBASIC1.17□□□□□ -2.22
RaraP11416 Gm24381-201ENSMUST00000122697 104 ntBASIC1.16□□□□□ -2.22
RaraP11416 Gm25768-201ENSMUST00000158570 98 ntBASIC1.16□□□□□ -2.22
RaraP11416 Gm26338-201ENSMUST00000102372 110 ntBASIC1.15□□□□□ -2.23
RaraP11416 Gm25715-201ENSMUST00000158627 125 ntBASIC1.15□□□□□ -2.23
RaraP11416 Gm23180-201ENSMUST00000158686 125 ntBASIC1.15□□□□□ -2.23
Retrieved 100 of 76,532 protein–RNA pairs in 13.2 ms