Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Mir3109-201ENSMUST00000175301 88 ntBASIC0.57□□□□□ -2.32
Trim40Q3UWA4 Gm22699-201ENSMUST00000175376 105 ntBASIC0.57□□□□□ -2.32
Trim40Q3UWA4 Gm23416-201ENSMUST00000175520 95 ntBASIC0.57□□□□□ -2.32
Trim40Q3UWA4 Mir7663-201ENSMUST00000183950 61 ntBASIC0.57□□□□□ -2.32
Trim40Q3UWA4 Gm23303-201ENSMUST00000082714 152 ntBASIC0.57□□□□□ -2.32
Trim40Q3UWA4 Gm22753-201ENSMUST00000083657 107 ntBASIC0.57□□□□□ -2.32
Trim40Q3UWA4 Gm25378-201ENSMUST00000104333 129 ntBASIC0.56□□□□□ -2.32
Trim40Q3UWA4 Gm12432-201ENSMUST00000119540 186 ntBASIC0.56□□□□□ -2.32
Trim40Q3UWA4 Mir1899-201ENSMUST00000122798 96 ntBASIC0.56□□□□□ -2.32
Trim40Q3UWA4 Mir7657-201ENSMUST00000196051 57 ntBASIC0.56□□□□□ -2.32
Trim40Q3UWA4 AC168062.3-201ENSMUST00000227025 165 ntBASIC0.56□□□□□ -2.32
Trim40Q3UWA4 mt-Tm-201ENSMUST00000082395 69 ntBASIC0.56□□□□□ -2.32
Trim40Q3UWA4 Gm27289-201ENSMUST00000183341 82 ntBASIC0.55□□□□□ -2.32
Trim40Q3UWA4 Gm36956-201ENSMUST00000193830 214 ntBASIC0.55□□□□□ -2.32
Trim40Q3UWA4 Gm45489-201ENSMUST00000211753 443 ntTSL 3 BASIC0.55□□□□□ -2.32
Trim40Q3UWA4 AC124196.2-201ENSMUST00000224835 145 ntBASIC0.55□□□□□ -2.32
Trim40Q3UWA4 Gm25814-201ENSMUST00000082754 107 ntBASIC0.55□□□□□ -2.32
Trim40Q3UWA4 Gm26082-201ENSMUST00000104070 127 ntBASIC0.54□□□□□ -2.32
Trim40Q3UWA4 Gm23320-201ENSMUST00000104462 127 ntBASIC0.54□□□□□ -2.32
Trim40Q3UWA4 Gm22373-201ENSMUST00000104584 89 ntBASIC0.54□□□□□ -2.32
Trim40Q3UWA4 Gm11644-201ENSMUST00000119735 150 ntBASIC0.54□□□□□ -2.32
Trim40Q3UWA4 Gm23337-201ENSMUST00000158959 118 ntBASIC0.54□□□□□ -2.32
Trim40Q3UWA4 Mir3094-201ENSMUST00000175121 64 ntBASIC0.54□□□□□ -2.32
Trim40Q3UWA4 Mir3070a-201ENSMUST00000175468 89 ntBASIC0.54□□□□□ -2.32
Trim40Q3UWA4 Gm5581-201ENSMUST00000072940 2550 ntBASIC0.53□□□□□ -2.32
Trim40Q3UWA4 Gm14626-201ENSMUST00000117619 216 ntBASIC0.53□□□□□ -2.32
Trim40Q3UWA4 Gm15289-201ENSMUST00000117793 244 ntBASIC0.53□□□□□ -2.32
Trim40Q3UWA4 Gm14946-201ENSMUST00000119859 296 ntBASIC0.53□□□□□ -2.32
Trim40Q3UWA4 Gm6985-201ENSMUST00000121255 271 ntBASIC0.53□□□□□ -2.32
Trim40Q3UWA4 Gm25901-201ENSMUST00000158494 130 ntBASIC0.53□□□□□ -2.32
Trim40Q3UWA4 Gm22302-201ENSMUST00000082657 106 ntBASIC0.53□□□□□ -2.32
Trim40Q3UWA4 Gm23445-201ENSMUST00000082800 107 ntBASIC0.53□□□□□ -2.32
Trim40Q3UWA4 Snord60-201ENSMUST00000082834 78 ntBASIC0.53□□□□□ -2.32
Trim40Q3UWA4 Snord72-201ENSMUST00000104549 81 ntBASIC0.52□□□□□ -2.33
Trim40Q3UWA4 Gm23989-201ENSMUST00000117030 66 ntBASIC0.52□□□□□ -2.33
Trim40Q3UWA4 Gm22522-201ENSMUST00000158271 151 ntBASIC0.52□□□□□ -2.33
Trim40Q3UWA4 Gm27894-201ENSMUST00000184177 92 ntBASIC0.52□□□□□ -2.33
Trim40Q3UWA4 Gm37545-201ENSMUST00000186512 148 ntBASIC0.52□□□□□ -2.33
Trim40Q3UWA4 AC116319.1-201ENSMUST00000227765 222 ntBASIC0.52□□□□□ -2.33
Trim40Q3UWA4 Gm24624-201ENSMUST00000082617 164 ntBASIC0.52□□□□□ -2.33
Trim40Q3UWA4 Gm10172-201ENSMUST00000085929 558 ntBASIC0.52□□□□□ -2.33
Trim40Q3UWA4 Gm23947-201ENSMUST00000093636 107 ntBASIC0.52□□□□□ -2.33
Trim40Q3UWA4 Gm37824-201ENSMUST00000193430 3236 ntBASIC0.52□□□□□ -2.33
Trim40Q3UWA4 n-R5s6-201ENSMUST00000122663 88 ntBASIC0.51□□□□□ -2.33
Trim40Q3UWA4 Gm16265-201ENSMUST00000134558 108 ntBASIC0.51□□□□□ -2.33
Trim40Q3UWA4 Gm24106-201ENSMUST00000175498 127 ntBASIC0.51□□□□□ -2.33
Trim40Q3UWA4 Cr2-206ENSMUST00000193801 206 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
Trim40Q3UWA4 Gm36929-201ENSMUST00000195152 166 ntTSL 5 BASIC0.51□□□□□ -2.33
Trim40Q3UWA4 AC113441.1-201ENSMUST00000223464 134 ntBASIC0.51□□□□□ -2.33
Trim40Q3UWA4 Mir20b-201ENSMUST00000102087 80 ntBASIC0.5□□□□□ -2.33
Trim40Q3UWA4 Gm23881-201ENSMUST00000116872 66 ntBASIC0.5□□□□□ -2.33
Trim40Q3UWA4 Gm25329-201ENSMUST00000158041 126 ntBASIC0.5□□□□□ -2.33
Trim40Q3UWA4 Gm26236-201ENSMUST00000175536 137 ntBASIC0.5□□□□□ -2.33
Trim40Q3UWA4 Gm27993-201ENSMUST00000184362 85 ntBASIC0.5□□□□□ -2.33
Trim40Q3UWA4 Gm23509-201ENSMUST00000083080 160 ntBASIC0.5□□□□□ -2.33
Trim40Q3UWA4 Snord90-201ENSMUST00000104568 111 ntBASIC0.49□□□□□ -2.33
Trim40Q3UWA4 Mir7052-201ENSMUST00000184821 65 ntBASIC0.49□□□□□ -2.33
Trim40Q3UWA4 AC150901.1-201ENSMUST00000208407 145 ntBASIC0.49□□□□□ -2.33
Trim40Q3UWA4 Gm10548-202ENSMUST00000165672 272 ntBASIC0.48□□□□□ -2.33
Trim40Q3UWA4 Mir1954-201ENSMUST00000175595 86 ntBASIC0.48□□□□□ -2.33
Trim40Q3UWA4 Gm37330-201ENSMUST00000192606 153 ntBASIC0.48□□□□□ -2.33
Trim40Q3UWA4 Ighv15-1-201ENSMUST00000194450 276 ntBASIC0.48□□□□□ -2.33
Trim40Q3UWA4 Gm25797-201ENSMUST00000082640 107 ntBASIC0.48□□□□□ -2.33
Trim40Q3UWA4 Gm23301-201ENSMUST00000082713 65 ntBASIC0.48□□□□□ -2.33
Trim40Q3UWA4 Gm25401-201ENSMUST00000082975 106 ntBASIC0.48□□□□□ -2.33
Trim40Q3UWA4 Olfr867-202ENSMUST00000212098 4228 ntTSL 3 BASIC0.47□□□□□ -2.33
Trim40Q3UWA4 Polr2k-ps-201ENSMUST00000120170 175 ntBASIC0.47□□□□□ -2.33
Trim40Q3UWA4 Gm26484-201ENSMUST00000158018 106 ntBASIC0.47□□□□□ -2.33
Trim40Q3UWA4 Gm23917-201ENSMUST00000175256 98 ntBASIC0.47□□□□□ -2.33
Trim40Q3UWA4 Mir100-201ENSMUST00000175270 80 ntBASIC0.47□□□□□ -2.33
Trim40Q3UWA4 Gm28398-201ENSMUST00000186587 166 ntTSL 5 BASIC0.47□□□□□ -2.33
Trim40Q3UWA4 Gm29653-201ENSMUST00000187192 166 ntTSL 5 BASIC0.47□□□□□ -2.33
Trim40Q3UWA4 Gm28810-201ENSMUST00000188173 166 ntTSL 5 BASIC0.47□□□□□ -2.33
Trim40Q3UWA4 Gm28575-201ENSMUST00000188234 166 ntTSL 5 BASIC0.47□□□□□ -2.33
Trim40Q3UWA4 Gm28132-201ENSMUST00000189901 166 ntTSL 5 BASIC0.47□□□□□ -2.33
Trim40Q3UWA4 Gm29580-201ENSMUST00000189921 166 ntTSL 5 BASIC0.47□□□□□ -2.33
Trim40Q3UWA4 Gm28858-201ENSMUST00000190517 166 ntTSL 5 BASIC0.47□□□□□ -2.33
Trim40Q3UWA4 Gm28210-201ENSMUST00000190631 166 ntTSL 5 BASIC0.47□□□□□ -2.33
Trim40Q3UWA4 Gm28336-201ENSMUST00000190743 166 ntTSL 5 BASIC0.47□□□□□ -2.33
Trim40Q3UWA4 Gm29042-201ENSMUST00000191564 166 ntTSL 5 BASIC0.47□□□□□ -2.33
Trim40Q3UWA4 Gm37998-201ENSMUST00000195699 166 ntTSL 5 BASIC0.47□□□□□ -2.33
Trim40Q3UWA4 Gm43432-201ENSMUST00000196352 121 ntBASIC0.47□□□□□ -2.33
Trim40Q3UWA4 Gm42935-201ENSMUST00000202004 151 ntBASIC0.47□□□□□ -2.33
Trim40Q3UWA4 Gm18502-201ENSMUST00000218679 199 ntBASIC0.47□□□□□ -2.33
Trim40Q3UWA4 Gm13723-201ENSMUST00000130722 5036 ntAPPRIS P1 TSL 2 BASIC0.46□□□□□ -2.34
Trim40Q3UWA4 Gm23253-201ENSMUST00000157441 104 ntBASIC0.46□□□□□ -2.34
Trim40Q3UWA4 Gm26158-201ENSMUST00000158973 119 ntBASIC0.46□□□□□ -2.34
Trim40Q3UWA4 Trbv25-201ENSMUST00000194700 273 ntBASIC0.46□□□□□ -2.34
Trim40Q3UWA4 Gm44469-201ENSMUST00000198558 79 ntBASIC0.46□□□□□ -2.34
Trim40Q3UWA4 Gm24461-201ENSMUST00000082735 103 ntBASIC0.46□□□□□ -2.34
Trim40Q3UWA4 Gm26011-201ENSMUST00000104410 104 ntBASIC0.45□□□□□ -2.34
Trim40Q3UWA4 Mir1191-201ENSMUST00000116883 120 ntBASIC0.45□□□□□ -2.34
Trim40Q3UWA4 Gm14884-201ENSMUST00000120456 196 ntBASIC0.45□□□□□ -2.34
Trim40Q3UWA4 Gm23857-201ENSMUST00000158379 111 ntBASIC0.45□□□□□ -2.34
Trim40Q3UWA4 Mir7010-201ENSMUST00000183464 63 ntBASIC0.45□□□□□ -2.34
Trim40Q3UWA4 AC159093.2-201ENSMUST00000227881 297 ntBASIC0.45□□□□□ -2.34
Trim40Q3UWA4 mt-Atp8-201ENSMUST00000082407 204 ntAPPRIS P1 BASIC0.45□□□□□ -2.34
Trim40Q3UWA4 Mir377-201ENSMUST00000083504 68 ntBASIC0.45□□□□□ -2.34
Trim40Q3UWA4 Fam46d-201ENSMUST00000101292 2995 ntAPPRIS P1 TSL 1 (best) BASIC0.45□□□□□ -2.34
Trim40Q3UWA4 Gm22469-201ENSMUST00000104118 133 ntBASIC0.44□□□□□ -2.34
Retrieved 100 of 76,532 protein–RNA pairs in 133.3 ms