Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Gm24635-201ENSMUST00000122712 128 ntBASIC0.71□□□□□ -2.3
Scn4aQ9ER60 Gm24724-201ENSMUST00000158230 107 ntBASIC0.71□□□□□ -2.3
Scn4aQ9ER60 Gm25718-201ENSMUST00000158632 118 ntBASIC0.71□□□□□ -2.3
Scn4aQ9ER60 Gm25241-201ENSMUST00000174909 84 ntBASIC0.71□□□□□ -2.3
Scn4aQ9ER60 Gm26217-201ENSMUST00000175212 84 ntBASIC0.71□□□□□ -2.3
Scn4aQ9ER60 Gm44563-201ENSMUST00000207958 178 ntBASIC0.71□□□□□ -2.3
Scn4aQ9ER60 Gm22914-201ENSMUST00000175195 77 ntBASIC0.71□□□□□ -2.3
Scn4aQ9ER60 Gm42988-201ENSMUST00000198116 225 ntBASIC0.71□□□□□ -2.3
Scn4aQ9ER60 Gm22544-201ENSMUST00000104349 127 ntBASIC0.7□□□□□ -2.3
Scn4aQ9ER60 Gm22200-201ENSMUST00000158614 67 ntBASIC0.7□□□□□ -2.3
Scn4aQ9ER60 Mir654-201ENSMUST00000104787 84 ntBASIC0.69□□□□□ -2.3
Scn4aQ9ER60 Gm23581-201ENSMUST00000158531 63 ntBASIC0.69□□□□□ -2.3
Scn4aQ9ER60 Gm38113-201ENSMUST00000193704 201 ntBASIC0.69□□□□□ -2.3
Scn4aQ9ER60 CT485607.2-201ENSMUST00000214650 91 ntBASIC0.69□□□□□ -2.3
Scn4aQ9ER60 Sprr4-201ENSMUST00000062129 231 ntAPPRIS P1 BASIC0.69□□□□□ -2.3
Scn4aQ9ER60 Gm23941-201ENSMUST00000101953 107 ntBASIC0.68□□□□□ -2.3
Scn4aQ9ER60 Gm22051-201ENSMUST00000117002 127 ntBASIC0.68□□□□□ -2.3
Scn4aQ9ER60 Gm25783-201ENSMUST00000122525 190 ntBASIC0.68□□□□□ -2.3
Scn4aQ9ER60 Gm44464-201ENSMUST00000198010 138 ntBASIC0.68□□□□□ -2.3
Scn4aQ9ER60 AC129085.1-201ENSMUST00000225263 165 ntBASIC0.68□□□□□ -2.3
Scn4aQ9ER60 Snora41-201ENSMUST00000082668 132 ntBASIC0.68□□□□□ -2.3
Scn4aQ9ER60 Gm24316-201ENSMUST00000083041 107 ntBASIC0.68□□□□□ -2.3
Scn4aQ9ER60 Mir30a-201ENSMUST00000083471 71 ntBASIC0.68□□□□□ -2.3
Scn4aQ9ER60 1700120G11Rik-201ENSMUST00000150273 491 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
Scn4aQ9ER60 Gm26415-201ENSMUST00000157673 292 ntBASIC0.68□□□□□ -2.3
Scn4aQ9ER60 Gm24006-201ENSMUST00000158462 132 ntBASIC0.68□□□□□ -2.3
Scn4aQ9ER60 Gm45544-201ENSMUST00000211130 88 ntBASIC0.68□□□□□ -2.3
Scn4aQ9ER60 Gm25142-201ENSMUST00000082698 107 ntBASIC0.68□□□□□ -2.3
Scn4aQ9ER60 Gm12924-201ENSMUST00000121747 318 ntBASIC0.67□□□□□ -2.3
Scn4aQ9ER60 Gm25362-201ENSMUST00000158854 105 ntBASIC0.67□□□□□ -2.3
Scn4aQ9ER60 Gm25634-201ENSMUST00000082667 105 ntBASIC0.67□□□□□ -2.3
Scn4aQ9ER60 Gm22571-201ENSMUST00000082984 70 ntBASIC0.67□□□□□ -2.3
Scn4aQ9ER60 4930522L14Rik-202ENSMUST00000112547 2001 ntAPPRIS P1 TSL 5 BASIC0.66□□□□□ -2.3
Scn4aQ9ER60 n-R5s18-201ENSMUST00000122740 121 ntBASIC0.66□□□□□ -2.3
Scn4aQ9ER60 Gm25558-201ENSMUST00000158083 106 ntBASIC0.66□□□□□ -2.3
Scn4aQ9ER60 Mir669k-201ENSMUST00000177742 127 ntBASIC0.66□□□□□ -2.3
Scn4aQ9ER60 Gm25673-201ENSMUST00000179957 127 ntBASIC0.66□□□□□ -2.3
Scn4aQ9ER60 Gm43563-201ENSMUST00000196761 198 ntBASIC0.66□□□□□ -2.3
Scn4aQ9ER60 Mir6915-201ENSMUST00000198839 69 ntBASIC0.66□□□□□ -2.3
Scn4aQ9ER60 Gm44396-201ENSMUST00000199843 114 ntBASIC0.66□□□□□ -2.3
Scn4aQ9ER60 Gm9805-201ENSMUST00000055305 171 ntAPPRIS P1 BASIC0.66□□□□□ -2.3
Scn4aQ9ER60 DQ267101-201ENSMUST00000082562 73 ntBASIC0.66□□□□□ -2.3
Scn4aQ9ER60 Gm23969-201ENSMUST00000083324 74 ntBASIC0.66□□□□□ -2.3
Scn4aQ9ER60 n-R5s183-201ENSMUST00000083939 115 ntBASIC0.66□□□□□ -2.3
Scn4aQ9ER60 Gm23841-201ENSMUST00000116951 114 ntBASIC0.66□□□□□ -2.3
Scn4aQ9ER60 Gm12797-201ENSMUST00000118645 273 ntBASIC0.66□□□□□ -2.3
Scn4aQ9ER60 Gm11204-201ENSMUST00000122438 147 ntBASIC0.66□□□□□ -2.3
Scn4aQ9ER60 Gm24903-201ENSMUST00000158131 126 ntBASIC0.66□□□□□ -2.3
Scn4aQ9ER60 Gm20391-201ENSMUST00000174722 106 ntBASIC0.66□□□□□ -2.3
Scn4aQ9ER60 Mir30c-2-201ENSMUST00000083633 84 ntBASIC0.66□□□□□ -2.3
Scn4aQ9ER60 Sel1l2-201ENSMUST00000120133 579 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
Scn4aQ9ER60 Gm24880-201ENSMUST00000158776 85 ntBASIC0.65□□□□□ -2.31
Scn4aQ9ER60 Gm27747-201ENSMUST00000184707 85 ntBASIC0.65□□□□□ -2.31
Scn4aQ9ER60 Gm28256-201ENSMUST00000188953 139 ntBASIC0.65□□□□□ -2.31
Scn4aQ9ER60 Gm28559-201ENSMUST00000190532 139 ntBASIC0.65□□□□□ -2.31
Scn4aQ9ER60 Mir324-201ENSMUST00000083600 89 ntBASIC0.65□□□□□ -2.31
Scn4aQ9ER60 Gm3211-201ENSMUST00000172721 304 ntTSL 3 BASIC0.64□□□□□ -2.31
Scn4aQ9ER60 Gm44211-201ENSMUST00000204867 145 ntBASIC0.64□□□□□ -2.31
Scn4aQ9ER60 Gm44959-201ENSMUST00000209127 231 ntBASIC0.64□□□□□ -2.31
Scn4aQ9ER60 Gm25378-201ENSMUST00000104333 129 ntBASIC0.64□□□□□ -2.31
Scn4aQ9ER60 Gm25108-201ENSMUST00000122473 78 ntBASIC0.64□□□□□ -2.31
Scn4aQ9ER60 Gm25024-201ENSMUST00000179667 104 ntBASIC0.64□□□□□ -2.31
Scn4aQ9ER60 Gm24020-201ENSMUST00000180156 108 ntBASIC0.64□□□□□ -2.31
Scn4aQ9ER60 Igkv13-54-1-201ENSMUST00000196495 303 ntBASIC0.64□□□□□ -2.31
Scn4aQ9ER60 Gm43898-201ENSMUST00000204456 424 ntBASIC0.64□□□□□ -2.31
Scn4aQ9ER60 Gm23203-201ENSMUST00000104374 107 ntBASIC0.63□□□□□ -2.31
Scn4aQ9ER60 Mir669d-2-201ENSMUST00000116854 86 ntBASIC0.63□□□□□ -2.31
Scn4aQ9ER60 Tra2b-ps-201ENSMUST00000119906 168 ntBASIC0.63□□□□□ -2.31
Scn4aQ9ER60 n-R5s6-201ENSMUST00000122663 88 ntBASIC0.63□□□□□ -2.31
Scn4aQ9ER60 Ranbp2-ps6-201ENSMUST00000183722 381 ntBASIC0.63□□□□□ -2.31
Scn4aQ9ER60 Gm38323-201ENSMUST00000192450 210 ntBASIC0.63□□□□□ -2.31
Scn4aQ9ER60 Mir468-201ENSMUST00000197332 78 ntBASIC0.63□□□□□ -2.31
Scn4aQ9ER60 Mir695-201ENSMUST00000102261 109 ntBASIC0.62□□□□□ -2.31
Scn4aQ9ER60 Gm22786-201ENSMUST00000104086 122 ntBASIC0.61□□□□□ -2.31
Scn4aQ9ER60 Gm22784-201ENSMUST00000104088 132 ntBASIC0.61□□□□□ -2.31
Scn4aQ9ER60 Gm22796-201ENSMUST00000157234 106 ntBASIC0.61□□□□□ -2.31
Scn4aQ9ER60 Gm26484-201ENSMUST00000158018 106 ntBASIC0.61□□□□□ -2.31
Scn4aQ9ER60 Gm44326-201ENSMUST00000198226 101 ntBASIC0.61□□□□□ -2.31
Scn4aQ9ER60 AC141438.3-201ENSMUST00000215632 202 ntBASIC0.61□□□□□ -2.31
Scn4aQ9ER60 Snora20-201ENSMUST00000082703 128 ntBASIC0.61□□□□□ -2.31
Scn4aQ9ER60 Gm24460-201ENSMUST00000082731 106 ntBASIC0.61□□□□□ -2.31
Scn4aQ9ER60 Gm25828-201ENSMUST00000157087 95 ntBASIC0.61□□□□□ -2.31
Scn4aQ9ER60 Gm26274-201ENSMUST00000157103 321 ntBASIC0.61□□□□□ -2.31
Scn4aQ9ER60 Gm25397-201ENSMUST00000176951 92 ntBASIC0.61□□□□□ -2.31
Scn4aQ9ER60 Mir6350-201ENSMUST00000183639 105 ntBASIC0.61□□□□□ -2.31
Scn4aQ9ER60 Gm23655-201ENSMUST00000122627 105 ntBASIC0.6□□□□□ -2.31
Scn4aQ9ER60 Gm25968-201ENSMUST00000157167 100 ntBASIC0.6□□□□□ -2.31
Scn4aQ9ER60 Gm22332-201ENSMUST00000158072 126 ntBASIC0.6□□□□□ -2.31
Scn4aQ9ER60 Gm23579-201ENSMUST00000158528 103 ntBASIC0.6□□□□□ -2.31
Scn4aQ9ER60 Gm26073-201ENSMUST00000179906 127 ntBASIC0.6□□□□□ -2.31
Scn4aQ9ER60 Mir451a-201ENSMUST00000093557 72 ntBASIC0.6□□□□□ -2.31
Scn4aQ9ER60 Mir669o-201ENSMUST00000103898 96 ntBASIC0.59□□□□□ -2.31
Scn4aQ9ER60 Gm25769-201ENSMUST00000158569 127 ntBASIC0.59□□□□□ -2.31
Scn4aQ9ER60 Gm28398-201ENSMUST00000186587 166 ntTSL 5 BASIC0.59□□□□□ -2.31
Scn4aQ9ER60 Gm29653-201ENSMUST00000187192 166 ntTSL 5 BASIC0.59□□□□□ -2.31
Scn4aQ9ER60 Gm28810-201ENSMUST00000188173 166 ntTSL 5 BASIC0.59□□□□□ -2.31
Scn4aQ9ER60 Gm28575-201ENSMUST00000188234 166 ntTSL 5 BASIC0.59□□□□□ -2.31
Scn4aQ9ER60 Gm28132-201ENSMUST00000189901 166 ntTSL 5 BASIC0.59□□□□□ -2.31
Scn4aQ9ER60 Gm29580-201ENSMUST00000189921 166 ntTSL 5 BASIC0.59□□□□□ -2.31
Scn4aQ9ER60 Gm28858-201ENSMUST00000190517 166 ntTSL 5 BASIC0.59□□□□□ -2.31
Retrieved 100 of 76,532 protein–RNA pairs in 154.4 ms