Protein–RNA interactions for Protein: Q9CQ71

Rpa3, Replication protein A 14 kDa subunit, mousemouse

Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rpa3Q9CQ71 Gm10172-201ENSMUST00000085929 558 ntBASIC-0.37□□□□□ -2.47
Rpa3Q9CQ71 Gm26076-201ENSMUST00000104065 105 ntBASIC-0.38□□□□□ -2.47
Rpa3Q9CQ71 Gm14307-201ENSMUST00000118930 291 ntBASIC-0.38□□□□□ -2.47
Rpa3Q9CQ71 Gm14297-201ENSMUST00000129110 291 ntBASIC-0.38□□□□□ -2.47
Rpa3Q9CQ71 Gm16362-201ENSMUST00000135189 214 ntBASIC-0.38□□□□□ -2.47
Rpa3Q9CQ71 Gm23180-201ENSMUST00000158686 125 ntBASIC-0.38□□□□□ -2.47
Rpa3Q9CQ71 Gm25615-201ENSMUST00000177836 94 ntBASIC-0.38□□□□□ -2.47
Rpa3Q9CQ71 Gm28579-201ENSMUST00000186143 369 ntBASIC-0.38□□□□□ -2.47
Rpa3Q9CQ71 Mir3967-201ENSMUST00000198710 68 ntBASIC-0.38□□□□□ -2.47
Rpa3Q9CQ71 Gm44977-201ENSMUST00000205283 420 ntBASIC-0.38□□□□□ -2.47
Rpa3Q9CQ71 Gm25136-201ENSMUST00000083253 115 ntBASIC-0.38□□□□□ -2.47
Rpa3Q9CQ71 Mir18-201ENSMUST00000083469 96 ntBASIC-0.38□□□□□ -2.47
Rpa3Q9CQ71 Mir214-201ENSMUST00000083582 110 ntBASIC-0.38□□□□□ -2.47
Rpa3Q9CQ71 Mir759-201ENSMUST00000103254 98 ntBASIC-0.39□□□□□ -2.47
Rpa3Q9CQ71 Gm14039-201ENSMUST00000118705 101 ntBASIC-0.39□□□□□ -2.47
Rpa3Q9CQ71 Gm23036-201ENSMUST00000157885 99 ntBASIC-0.39□□□□□ -2.47
Rpa3Q9CQ71 Gm25982-201ENSMUST00000157920 101 ntBASIC-0.39□□□□□ -2.47
Rpa3Q9CQ71 Mir6342-201ENSMUST00000183870 125 ntBASIC-0.39□□□□□ -2.47
Rpa3Q9CQ71 Gm28767-201ENSMUST00000188601 114 ntBASIC-0.39□□□□□ -2.47
Rpa3Q9CQ71 Sva-201ENSMUST00000024059 651 ntAPPRIS P2 TSL 1 (best) BASIC-0.39□□□□□ -2.47
Rpa3Q9CQ71 Gm22365-201ENSMUST00000093750 117 ntBASIC-0.39□□□□□ -2.47
Rpa3Q9CQ71 Gm45265-201ENSMUST00000210852 2497 ntBASIC-0.4□□□□□ -2.47
Rpa3Q9CQ71 Gm25611-201ENSMUST00000104017 133 ntBASIC-0.4□□□□□ -2.47
Rpa3Q9CQ71 B230307C23Rik-201ENSMUST00000113729 192 ntTSL 5 BASIC-0.4□□□□□ -2.47
Rpa3Q9CQ71 Gm22087-201ENSMUST00000158339 88 ntBASIC-0.4□□□□□ -2.47
Rpa3Q9CQ71 Gm22942-201ENSMUST00000158563 124 ntBASIC-0.4□□□□□ -2.47
Rpa3Q9CQ71 AC159896.1-201ENSMUST00000215264 215 ntBASIC-0.4□□□□□ -2.47
Rpa3Q9CQ71 Gm25006-201ENSMUST00000083813 107 ntBASIC-0.4□□□□□ -2.47
Rpa3Q9CQ71 Mir669f-201ENSMUST00000103850 121 ntBASIC-0.41□□□□□ -2.48
Rpa3Q9CQ71 Gm24796-201ENSMUST00000104007 107 ntBASIC-0.41□□□□□ -2.48
Rpa3Q9CQ71 Gm38364-201ENSMUST00000191814 179 ntBASIC-0.41□□□□□ -2.48
Rpa3Q9CQ71 Gm45617-201ENSMUST00000211132 209 ntBASIC-0.41□□□□□ -2.48
Rpa3Q9CQ71 Gm23412-201ENSMUST00000083017 107 ntBASIC-0.41□□□□□ -2.48
Rpa3Q9CQ71 Gm26395-201ENSMUST00000104094 132 ntBASIC-0.42□□□□□ -2.48
Rpa3Q9CQ71 Gm11042-201ENSMUST00000110441 120 ntAPPRIS P1 TSL 5 BASIC-0.42□□□□□ -2.48
Rpa3Q9CQ71 Gm22999-201ENSMUST00000157082 88 ntBASIC-0.42□□□□□ -2.48
Rpa3Q9CQ71 Gm25970-201ENSMUST00000157165 86 ntBASIC-0.42□□□□□ -2.48
Rpa3Q9CQ71 Gm22815-201ENSMUST00000157451 62 ntBASIC-0.42□□□□□ -2.48
Rpa3Q9CQ71 Gm22962-201ENSMUST00000157962 73 ntBASIC-0.42□□□□□ -2.48
Rpa3Q9CQ71 Gm23022-201ENSMUST00000158768 180 ntBASIC-0.42□□□□□ -2.48
Rpa3Q9CQ71 Gm23917-201ENSMUST00000175256 98 ntBASIC-0.42□□□□□ -2.48
Rpa3Q9CQ71 Zfp967-201ENSMUST00000108997 417 ntTSL 3 BASIC-0.43□□□□□ -2.48
Rpa3Q9CQ71 Zfp969-201ENSMUST00000109027 417 ntTSL 3 BASIC-0.43□□□□□ -2.48
Rpa3Q9CQ71 Zfp965-203ENSMUST00000109043 417 ntTSL 5 BASIC-0.43□□□□□ -2.48
Rpa3Q9CQ71 Gm6952-201ENSMUST00000118629 159 ntBASIC-0.43□□□□□ -2.48
Rpa3Q9CQ71 Gm24635-201ENSMUST00000122712 128 ntBASIC-0.43□□□□□ -2.48
Rpa3Q9CQ71 Gm22767-201ENSMUST00000158365 165 ntBASIC-0.43□□□□□ -2.48
Rpa3Q9CQ71 Gm25161-201ENSMUST00000158913 132 ntBASIC-0.43□□□□□ -2.48
Rpa3Q9CQ71 Gm26158-201ENSMUST00000158973 119 ntBASIC-0.43□□□□□ -2.48
Rpa3Q9CQ71 Igkv13-54-1-201ENSMUST00000196495 303 ntBASIC-0.43□□□□□ -2.48
Rpa3Q9CQ71 Gm44149-201ENSMUST00000204256 226 ntBASIC-0.43□□□□□ -2.48
Rpa3Q9CQ71 Gm25142-201ENSMUST00000082698 107 ntBASIC-0.43□□□□□ -2.48
Rpa3Q9CQ71 Gm24030-201ENSMUST00000083931 164 ntBASIC-0.43□□□□□ -2.48
Rpa3Q9CQ71 Gm25338-201ENSMUST00000116849 120 ntBASIC-0.44□□□□□ -2.48
Rpa3Q9CQ71 Gm26482-201ENSMUST00000158015 62 ntBASIC-0.44□□□□□ -2.48
Rpa3Q9CQ71 Mir5124a-201ENSMUST00000175528 72 ntBASIC-0.44□□□□□ -2.48
Rpa3Q9CQ71 Ranbp2-ps1-201ENSMUST00000184001 403 ntBASIC-0.44□□□□□ -2.48
Rpa3Q9CQ71 Mir1949-202ENSMUST00000199259 70 ntBASIC-0.44□□□□□ -2.48
Rpa3Q9CQ71 Gm44803-201ENSMUST00000204384 156 ntBASIC-0.44□□□□□ -2.48
Rpa3Q9CQ71 CT025603.4-201ENSMUST00000225777 413 ntBASIC-0.44□□□□□ -2.48
Rpa3Q9CQ71 Gm23509-201ENSMUST00000083080 160 ntBASIC-0.44□□□□□ -2.48
Rpa3Q9CQ71 Traj35-201ENSMUST00000103706 65 ntAPPRIS P1 BASIC-0.45□□□□□ -2.48
Rpa3Q9CQ71 Gm25828-201ENSMUST00000157087 95 ntBASIC-0.45□□□□□ -2.48
Rpa3Q9CQ71 Gm25885-201ENSMUST00000157779 109 ntBASIC-0.45□□□□□ -2.48
Rpa3Q9CQ71 Gm22555-201ENSMUST00000157801 62 ntBASIC-0.45□□□□□ -2.48
Rpa3Q9CQ71 Gm29535-201ENSMUST00000185723 109 ntBASIC-0.45□□□□□ -2.48
Rpa3Q9CQ71 Gm28143-201ENSMUST00000191082 109 ntBASIC-0.45□□□□□ -2.48
Rpa3Q9CQ71 Gm44419-201ENSMUST00000203338 229 ntBASIC-0.45□□□□□ -2.48
Rpa3Q9CQ71 Gm22981-201ENSMUST00000082611 75 ntBASIC-0.45□□□□□ -2.48
Rpa3Q9CQ71 Rny3-201ENSMUST00000083011 102 ntBASIC-0.45□□□□□ -2.48
Rpa3Q9CQ71 Cdh4-202ENSMUST00000098996 69 ntTSL 5 BASIC-0.45□□□□□ -2.48
Rpa3Q9CQ71 Mir1899-201ENSMUST00000122798 96 ntBASIC-0.46□□□□□ -2.48
Rpa3Q9CQ71 Gm22085-201ENSMUST00000158344 110 ntBASIC-0.46□□□□□ -2.48
Rpa3Q9CQ71 Gm23059-201ENSMUST00000158978 107 ntBASIC-0.46□□□□□ -2.48
Rpa3Q9CQ71 Gm10548-202ENSMUST00000165672 272 ntBASIC-0.46□□□□□ -2.48
Rpa3Q9CQ71 Gm27997-201ENSMUST00000184942 69 ntBASIC-0.46□□□□□ -2.48
Rpa3Q9CQ71 Eif4e-206ENSMUST00000200239 526 ntTSL 5 BASIC-0.46□□□□□ -2.48
Rpa3Q9CQ71 Gm7240-201ENSMUST00000220769 664 ntBASIC-0.46□□□□□ -2.48
Rpa3Q9CQ71 AC159093.2-201ENSMUST00000227881 297 ntBASIC-0.46□□□□□ -2.48
Rpa3Q9CQ71 Gm25323-201ENSMUST00000122555 103 ntBASIC-0.47□□□□□ -2.48
Rpa3Q9CQ71 Gm24192-201ENSMUST00000157978 145 ntBASIC-0.47□□□□□ -2.48
Rpa3Q9CQ71 Gm23918-201ENSMUST00000175253 106 ntBASIC-0.47□□□□□ -2.48
Rpa3Q9CQ71 Mir669k-201ENSMUST00000177742 127 ntBASIC-0.47□□□□□ -2.48
Rpa3Q9CQ71 Gm24488-201ENSMUST00000179934 127 ntBASIC-0.47□□□□□ -2.48
Rpa3Q9CQ71 Gm25673-201ENSMUST00000179957 127 ntBASIC-0.47□□□□□ -2.48
Rpa3Q9CQ71 Gm25701-201ENSMUST00000179988 127 ntBASIC-0.47□□□□□ -2.48
Rpa3Q9CQ71 Gm26431-201ENSMUST00000180199 127 ntBASIC-0.47□□□□□ -2.48
Rpa3Q9CQ71 Snord42a-201ENSMUST00000082606 65 ntBASIC-0.47□□□□□ -2.48
Rpa3Q9CQ71 Gm23845-201ENSMUST00000083834 152 ntBASIC-0.47□□□□□ -2.48
Rpa3Q9CQ71 Scarna9-201ENSMUST00000104318 70 ntBASIC-0.48□□□□□ -2.49
Rpa3Q9CQ71 Scgb1b23-ps-201ENSMUST00000116009 252 ntBASIC-0.48□□□□□ -2.49
Rpa3Q9CQ71 Gm23881-201ENSMUST00000116872 66 ntBASIC-0.48□□□□□ -2.49
Rpa3Q9CQ71 Polr2k-ps-201ENSMUST00000120170 175 ntBASIC-0.48□□□□□ -2.49
Rpa3Q9CQ71 Gm22984-201ENSMUST00000122751 122 ntBASIC-0.48□□□□□ -2.49
Rpa3Q9CQ71 Vmn1r-ps13-201ENSMUST00000204697 134 ntBASIC-0.48□□□□□ -2.49
Rpa3Q9CQ71 Snord60-201ENSMUST00000082834 78 ntBASIC-0.48□□□□□ -2.49
Rpa3Q9CQ71 Snora75-201ENSMUST00000082903 133 ntBASIC-0.48□□□□□ -2.49
Rpa3Q9CQ71 Gm10509-201ENSMUST00000097384 259 ntAPPRIS P1 BASIC-0.48□□□□□ -2.49
Rpa3Q9CQ71 Gm14327-202ENSMUST00000108935 1451 ntAPPRIS P1 TSL 1 (best) BASIC-0.48□□□□□ -2.49
Rpa3Q9CQ71 Gm15213-201ENSMUST00000122098 216 ntBASIC-0.49□□□□□ -2.49
Retrieved 100 of 76,532 protein–RNA pairs in 251.3 ms