Protein–RNA interactions for Protein: P32588

PUB1, Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1, yeastyeast

Known RBP RIP-Chip data

Length 453 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
PUB1P32588 FIG2YCR089W 4830 nt1.42□□□□□ -2.18
PUB1P32588 SIP4YJL089W 2490 nt1.42□□□□□ -2.18
PUB1P32588 EST2YLR318W 2655 nt1.42□□□□□ -2.18
PUB1P32588 BUL2YML111W 2763 nt1.42□□□□□ -2.18
PUB1P32588 NUP145YGL092W 3954 nt1.41□□□□□ -2.18
PUB1P32588 tQ(UUG)QtQ(UUG)Q 76 nt1.41□□□□□ -2.18
PUB1P32588 NST1YNL091W 3723 nt1.41□□□□□ -2.18
PUB1P32588 MSN5YDR335W 3675 nt1.41□□□□□ -2.18
PUB1P32588 YJL077W-AYJL077W-A 87 nt1.4□□□□□ -2.19
PUB1P32588 CCH1YGR217W 6120 nt1.39□□□□□ -2.19
PUB1P32588 YLL006W-AYLL006W-A 177 nt1.38□□□□□ -2.19
PUB1P32588 NUP192YJL039C 5052 nt1.37□□□□□ -2.19
PUB1P32588 LAA1YJL207C 6045 nt1.37□□□□□ -2.19
PUB1P32588 YNL054W-BYNL054W-B 5250 nt1.37□□□□□ -2.19
PUB1P32588 FYV8YGR196C 2454 nt1.36□□□□□ -2.19
PUB1P32588 BST1YFL025C 3090 nt1.34□□□□□ -2.19
PUB1P32588 CDC25YLR310C 4770 nt1.34□□□□□ -2.2
PUB1P32588 tQ(UUG)E2tQ(UUG)E2 72 nt1.33□□□□□ -2.2
PUB1P32588 CAT8YMR280C 4302 nt1.32□□□□□ -2.2
PUB1P32588 BUD3YCL014W 4911 nt1.3□□□□□ -2.2
PUB1P32588 YNL284C-BYNL284C-B 5268 nt1.28□□□□□ -2.2
PUB1P32588 YER090C-AYER090C-A 90 nt1.28□□□□□ -2.2
PUB1P32588 CLU1YMR012W 3834 nt1.27□□□□□ -2.21
PUB1P32588 SPC110YDR356W 2835 nt1.26□□□□□ -2.21
PUB1P32588 SPT7YBR081C 3999 nt1.26□□□□□ -2.21
PUB1P32588 YGR130CYGR130C 2451 nt1.24□□□□□ -2.21 RIP-Chip
PUB1P32588 YOR192C-BYOR192C-B 5313 nt1.19□□□□□ -2.22
PUB1P32588 RKR1YMR247C 4689 nt1.18□□□□□ -2.22
PUB1P32588 HKR1YDR420W 5409 nt1.18□□□□□ -2.22
PUB1P32588 snR67snR67 82 nt1.17□□□□□ -2.22
PUB1P32588 YDL114W-AYDL114W-A 114 nt1.16□□□□□ -2.22 RIP-Chip
PUB1P32588 YOR376W-AYOR376W-A 156 nt1.14□□□□□ -2.23
PUB1P32588 tH(GUG)E1tH(GUG)E1 72 nt1.12□□□□□ -2.23
PUB1P32588 tH(GUG)E2tH(GUG)E2 72 nt1.12□□□□□ -2.23
PUB1P32588 tH(GUG)G1tH(GUG)G1 72 nt1.12□□□□□ -2.23
PUB1P32588 tH(GUG)G2tH(GUG)G2 72 nt1.12□□□□□ -2.23
PUB1P32588 tH(GUG)HtH(GUG)H 72 nt1.12□□□□□ -2.23
PUB1P32588 tH(GUG)KtH(GUG)K 72 nt1.12□□□□□ -2.23
PUB1P32588 tH(GUG)MtH(GUG)M 72 nt1.12□□□□□ -2.23
PUB1P32588 VAM6YDL077C 3150 nt1.1□□□□□ -2.23
PUB1P32588 YKL106C-AYKL106C-A 120 nt1.1□□□□□ -2.23 RIP-Chip
PUB1P32588 tV(UAC)QtV(UAC)Q 76 nt1.08□□□□□ -2.24
PUB1P32588 IML1YJR138W 4755 nt1.07□□□□□ -2.24
PUB1P32588 YMR160WYMR160W 2451 nt1.04□□□□□ -2.24
PUB1P32588 YJR029WYJR029W 5268 nt1.03□□□□□ -2.24
PUB1P32588 YPR137C-BYPR137C-B 5268 nt1.03□□□□□ -2.24
PUB1P32588 tV(UAC)BtV(UAC)B 74 nt1.02□□□□□ -2.25
PUB1P32588 tV(UAC)DtV(UAC)D 74 nt1.02□□□□□ -2.25
PUB1P32588 MLP2YIL149C 5040 nt0.99□□□□□ -2.25
PUB1P32588 YPR117WYPR117W 7470 nt0.99□□□□□ -2.25
PUB1P32588 snR40snR40 97 nt0.98□□□□□ -2.25
PUB1P32588 LTE1YAL024C 4308 nt0.93□□□□□ -2.26
PUB1P32588 PAU24YBR301W 363 nt0.93□□□□□ -2.26
PUB1P32588 THO2YNL139C 4794 nt0.89□□□□□ -2.27
PUB1P32588 BEM2YER155C 6504 nt0.89□□□□□ -2.27
PUB1P32588 YBL100W-BYBL100W-B 5313 nt0.88□□□□□ -2.27
PUB1P32588 SCC2YDR180W 4482 nt0.87□□□□□ -2.27
PUB1P32588 EMT1tM(CAU)D 73 nt0.83□□□□□ -2.28
PUB1P32588 EMT5tM(CAU)J1 73 nt0.83□□□□□ -2.28
PUB1P32588 EMT3tM(CAU)J2 73 nt0.83□□□□□ -2.28
PUB1P32588 EMT4tM(CAU)M 73 nt0.83□□□□□ -2.28
PUB1P32588 EMT2tM(CAU)O2 73 nt0.83□□□□□ -2.28
PUB1P32588 snR77snR77 88 nt0.81□□□□□ -2.28
PUB1P32588 DOP1YDR141C 5097 nt0.8□□□□□ -2.28
PUB1P32588 YML100W-AYML100W-A 174 nt0.76□□□□□ -2.29
PUB1P32588 YOR316C-AYOR316C-A 210 nt0.76□□□□□ -2.29
PUB1P32588 tF(GAA)BtF(GAA)B 73 nt0.71□□□□□ -2.3
PUB1P32588 tF(GAA)FtF(GAA)F 73 nt0.71□□□□□ -2.3
PUB1P32588 tF(GAA)GtF(GAA)G 73 nt0.71□□□□□ -2.3
PUB1P32588 tF(GAA)H1tF(GAA)H1 73 nt0.71□□□□□ -2.3
PUB1P32588 tF(GAA)H2tF(GAA)H2 73 nt0.71□□□□□ -2.3
PUB1P32588 tF(GAA)MtF(GAA)M 73 nt0.71□□□□□ -2.3
PUB1P32588 tF(GAA)P1tF(GAA)P1 73 nt0.71□□□□□ -2.3
PUB1P32588 tF(GAA)P2tF(GAA)P2 73 nt0.71□□□□□ -2.3
PUB1P32588 SBH2YER019C-A 267 nt0.7□□□□□ -2.3
PUB1P32588 IQG1YPL242C 4488 nt0.69□□□□□ -2.3 RIP-Chip
PUB1P32588 SOV1YMR066W 2697 nt0.66□□□□□ -2.3
PUB1P32588 YOR186C-AYOR186C-A 210 nt0.65□□□□□ -2.31
PUB1P32588 UTP20YBL004W 7482 nt0.64□□□□□ -2.31
PUB1P32588 MLP1YKR095W 5628 nt0.62□□□□□ -2.31
PUB1P32588 UTP10YJL109C 5310 nt0.62□□□□□ -2.31
PUB1P32588 tT(AGU)BtT(AGU)B 73 nt0.61□□□□□ -2.31
PUB1P32588 tT(AGU)CtT(AGU)C 73 nt0.61□□□□□ -2.31
PUB1P32588 tT(AGU)DtT(AGU)D 73 nt0.61□□□□□ -2.31
PUB1P32588 tT(AGU)HtT(AGU)H 73 nt0.61□□□□□ -2.31
PUB1P32588 tT(AGU)I1tT(AGU)I1 73 nt0.61□□□□□ -2.31
PUB1P32588 tT(AGU)I2tT(AGU)I2 73 nt0.61□□□□□ -2.31
PUB1P32588 tT(AGU)JtT(AGU)J 73 nt0.61□□□□□ -2.31
PUB1P32588 tT(AGU)N1tT(AGU)N1 73 nt0.61□□□□□ -2.31
PUB1P32588 tT(AGU)N2tT(AGU)N2 73 nt0.61□□□□□ -2.31
PUB1P32588 tT(AGU)O1tT(AGU)O1 73 nt0.61□□□□□ -2.31
PUB1P32588 tT(AGU)O2tT(AGU)O2 73 nt0.61□□□□□ -2.31
PUB1P32588 YMR272W-AYMR272W-A 114 nt0.59□□□□□ -2.31
PUB1P32588 YOL014WYOL014W 375 nt0.57□□□□□ -2.32 RIP-Chip
PUB1P32588 YPR159C-AYPR159C-A 102 nt0.57□□□□□ -2.32
PUB1P32588 YKL145W-AYKL145W-A 93 nt0.55□□□□□ -2.32
PUB1P32588 PAU9YBL108C-A 129 nt0.55□□□□□ -2.32 RIP-Chip
PUB1P32588 ESP1YGR098C 4893 nt0.54□□□□□ -2.32
PUB1P32588 FMP27YLR454W 7887 nt0.48□□□□□ -2.33
PUB1P32588 snR128snR128 126 nt0.45□□□□□ -2.34
Retrieved 100 of 7,029 protein–RNA pairs in 12.8 ms