Protein–RNA interactions for Protein: P32561

RPD3, Histone deacetylase RPD3, yeastyeast

Predictions only

Length 433 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
RPD3P32561 DOP1YDR141C 5097 nt0.97□□□□□ -2.25
RPD3P32561 NIP1YMR309C 2439 nt0.96□□□□□ -2.26
RPD3P32561 snR62snR62 100 nt0.96□□□□□ -2.26
RPD3P32561 EST1YLR233C 2100 nt0.96□□□□□ -2.26
RPD3P32561 YLR286W-AYLR286W-A 135 nt0.96□□□□□ -2.26
RPD3P32561 YBL071C-BYBL071C-B 99 nt0.96□□□□□ -2.26
RPD3P32561 YBL100W-CYBL100W-C 120 nt0.96□□□□□ -2.26
RPD3P32561 RPS26AYGL189C 360 nt0.95□□□□□ -2.26
RPD3P32561 BUL2YML111W 2763 nt0.95□□□□□ -2.26
RPD3P32561 RKR1YMR247C 4689 nt0.94□□□□□ -2.26
RPD3P32561 SIP4YJL089W 2490 nt0.94□□□□□ -2.26
RPD3P32561 EMT1tM(CAU)D 73 nt0.94□□□□□ -2.26
RPD3P32561 EMT5tM(CAU)J1 73 nt0.94□□□□□ -2.26
RPD3P32561 EMT3tM(CAU)J2 73 nt0.94□□□□□ -2.26
RPD3P32561 EMT4tM(CAU)M 73 nt0.94□□□□□ -2.26
RPD3P32561 EMT2tM(CAU)O2 73 nt0.94□□□□□ -2.26
RPD3P32561 RDS3YPR094W 324 nt0.94□□□□□ -2.26
RPD3P32561 PAU12YGR294W 363 nt0.92□□□□□ -2.26
RPD3P32561 YLL066W-BYLL066W-B 171 nt0.92□□□□□ -2.26
RPD3P32561 PAU24YBR301W 363 nt0.92□□□□□ -2.26
RPD3P32561 BEM2YER155C 6504 nt0.91□□□□□ -2.26
RPD3P32561 PET111YMR257C 2403 nt0.89□□□□□ -2.27
RPD3P32561 YDL159C-BYDL159C-B 177 nt0.88□□□□□ -2.27
RPD3P32561 YLR299C-AYLR299C-A 93 nt0.88□□□□□ -2.27
RPD3P32561 YOL164W-AYOL164W-A 183 nt0.88□□□□□ -2.27
RPD3P32561 snR45snR45 172 nt0.88□□□□□ -2.27
RPD3P32561 MLP1YKR095W 5628 nt0.86□□□□□ -2.27
RPD3P32561 YOR192C-BYOR192C-B 5313 nt0.84□□□□□ -2.27
RPD3P32561 YGR240C-AYGR240C-A 201 nt0.84□□□□□ -2.27
RPD3P32561 tF(GAA)BtF(GAA)B 73 nt0.83□□□□□ -2.28
RPD3P32561 YDR371C-AYDR371C-A 105 nt0.83□□□□□ -2.28
RPD3P32561 tF(GAA)FtF(GAA)F 73 nt0.83□□□□□ -2.28
RPD3P32561 tF(GAA)GtF(GAA)G 73 nt0.83□□□□□ -2.28
RPD3P32561 tF(GAA)H1tF(GAA)H1 73 nt0.83□□□□□ -2.28
RPD3P32561 tF(GAA)H2tF(GAA)H2 73 nt0.83□□□□□ -2.28
RPD3P32561 tF(GAA)MtF(GAA)M 73 nt0.83□□□□□ -2.28
RPD3P32561 tF(GAA)P1tF(GAA)P1 73 nt0.83□□□□□ -2.28
RPD3P32561 tF(GAA)P2tF(GAA)P2 73 nt0.83□□□□□ -2.28
RPD3P32561 IQG1YPL242C 4488 nt0.81□□□□□ -2.28
RPD3P32561 tQ(UUG)QtQ(UUG)Q 76 nt0.79□□□□□ -2.28
RPD3P32561 YDR034C-AYDR034C-A 177 nt0.77□□□□□ -2.29
RPD3P32561 YNL054W-BYNL054W-B 5250 nt0.74□□□□□ -2.29
RPD3P32561 snR47snR47 99 nt0.73□□□□□ -2.29
RPD3P32561 MLP2YIL149C 5040 nt0.72□□□□□ -2.29
RPD3P32561 ORC3YLL004W 1851 nt0.71□□□□□ -2.3
RPD3P32561 UTP20YBL004W 7482 nt0.71□□□□□ -2.3
RPD3P32561 YOL014WYOL014W 375 nt0.7□□□□□ -2.3
RPD3P32561 YPR159C-AYPR159C-A 102 nt0.7□□□□□ -2.3
RPD3P32561 YER090C-AYER090C-A 90 nt0.69□□□□□ -2.3
RPD3P32561 YBL100W-BYBL100W-B 5313 nt0.68□□□□□ -2.3
RPD3P32561 YHR180C-BYHR180C-B 105 nt0.68□□□□□ -2.3
RPD3P32561 YKL145W-AYKL145W-A 93 nt0.66□□□□□ -2.3
RPD3P32561 YML054C-AYML054C-A 159 nt0.65□□□□□ -2.31
RPD3P32561 YOR186C-AYOR186C-A 210 nt0.65□□□□□ -2.31
RPD3P32561 YMR160WYMR160W 2451 nt0.65□□□□□ -2.31
RPD3P32561 YMR272W-AYMR272W-A 114 nt0.62□□□□□ -2.31
RPD3P32561 AI1Q0050 2505 nt0.62□□□□□ -2.31
RPD3P32561 snR50snR50 90 nt0.59□□□□□ -2.31
RPD3P32561 UTP10YJL109C 5310 nt0.58□□□□□ -2.32
RPD3P32561 RPL41AYDL184C 78 nt0.58□□□□□ -2.32
RPD3P32561 YBR296C-AYBR296C-A 120 nt0.57□□□□□ -2.32
RPD3P32561 tT(AGU)BtT(AGU)B 73 nt0.55□□□□□ -2.32
RPD3P32561 tT(AGU)CtT(AGU)C 73 nt0.55□□□□□ -2.32
RPD3P32561 tT(AGU)DtT(AGU)D 73 nt0.55□□□□□ -2.32
RPD3P32561 tT(AGU)HtT(AGU)H 73 nt0.55□□□□□ -2.32
RPD3P32561 tT(AGU)I1tT(AGU)I1 73 nt0.55□□□□□ -2.32
RPD3P32561 tT(AGU)I2tT(AGU)I2 73 nt0.55□□□□□ -2.32
RPD3P32561 tT(AGU)JtT(AGU)J 73 nt0.55□□□□□ -2.32
RPD3P32561 tT(AGU)N1tT(AGU)N1 73 nt0.55□□□□□ -2.32
RPD3P32561 tT(AGU)N2tT(AGU)N2 73 nt0.55□□□□□ -2.32
RPD3P32561 tT(AGU)O1tT(AGU)O1 73 nt0.55□□□□□ -2.32
RPD3P32561 tT(AGU)O2tT(AGU)O2 73 nt0.55□□□□□ -2.32
RPD3P32561 YBR109W-AYBR109W-A 225 nt0.55□□□□□ -2.32
RPD3P32561 snR67snR67 82 nt0.51□□□□□ -2.33
RPD3P32561 YKL225WYKL225W 348 nt0.5□□□□□ -2.33
RPD3P32561 snR64snR64 101 nt0.49□□□□□ -2.33
RPD3P32561 snR53snR53 91 nt0.43□□□□□ -2.34
RPD3P32561 snR38snR38 95 nt0.41□□□□□ -2.34
RPD3P32561 FMP27YLR454W 7887 nt0.41□□□□□ -2.34
RPD3P32561 ESP1YGR098C 4893 nt0.37□□□□□ -2.35
RPD3P32561 YML100W-AYML100W-A 174 nt0.36□□□□□ -2.35
RPD3P32561 SOV1YMR066W 2697 nt0.36□□□□□ -2.35
RPD3P32561 YER078W-AYER078W-A 165 nt0.34□□□□□ -2.36
RPD3P32561 YOL013W-AYOL013W-A 192 nt0.34□□□□□ -2.36
RPD3P32561 THO2YNL139C 4794 nt0.3□□□□□ -2.36
RPD3P32561 snR128snR128 126 nt0.28□□□□□ -2.36
RPD3P32561 SKI7YOR076C 2244 nt0.28□□□□□ -2.37
RPD3P32561 YKL106C-AYKL106C-A 120 nt0.15□□□□□ -2.39
RPD3P32561 YGR122C-AYGR122C-A 129 nt0.12□□□□□ -2.39
RPD3P32561 YDL159W-AYDL159W-A 132 nt0.11□□□□□ -2.39
RPD3P32561 PAU9YBL108C-A 129 nt0.09□□□□□ -2.4
RPD3P32561 YLR149C-AYLR149C-A 87 nt0□□□□□ -2.41
RPD3P32561 tA(UGC)QtA(UGC)Q 76 nt-0.02□□□□□ -2.41
RPD3P32561 YOR376W-AYOR376W-A 156 nt-0.05□□□□□ -2.42
RPD3P32561 YOR316C-AYOR316C-A 210 nt-0.06□□□□□ -2.42
RPD3P32561 SBH2YER019C-A 267 nt-0.08□□□□□ -2.42
RPD3P32561 YDL114W-AYDL114W-A 114 nt-0.1□□□□□ -2.43
RPD3P32561 YKL096C-BYKL096C-B 150 nt-0.13□□□□□ -2.43
RPD3P32561 tV(UAC)QtV(UAC)Q 76 nt-0.19□□□□□ -2.44
RPD3P32561 YJL113WYJL113W 4647 nt-0.23□□□□□ -2.45
Retrieved 100 of 7,029 protein–RNA pairs in 45.7 ms