Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
TM9SF3Q9HD45 HES6-205ENST00000409356 528 ntTSL 2 BASIC26.07■■□□□ 1.76
TM9SF3Q9HD45 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
TM9SF3Q9HD45 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC26.07■■□□□ 1.76
TM9SF3Q9HD45 AVEN-201ENST00000306730 1605 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
TM9SF3Q9HD45 TCEA2-204ENST00000395053 1733 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
TM9SF3Q9HD45 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC26.06■■□□□ 1.76
TM9SF3Q9HD45 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC26.06■■□□□ 1.76
TM9SF3Q9HD45 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
TM9SF3Q9HD45 ABHD17AP3-201ENST00000503096 1137 ntBASIC26.06■■□□□ 1.76
TM9SF3Q9HD45 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC26.06■■□□□ 1.76
TM9SF3Q9HD45 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC26.06■■□□□ 1.76
TM9SF3Q9HD45 BRD4-212ENST00000630599 726 ntTSL 2 BASIC26.06■■□□□ 1.76
TM9SF3Q9HD45 CHML-204ENST00000638121 920 ntTSL 2 BASIC26.06■■□□□ 1.76
TM9SF3Q9HD45 AL161658.1-201ENST00000623641 1967 ntBASIC26.06■■□□□ 1.76
TM9SF3Q9HD45 MSX1-201ENST00000382723 1939 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
TM9SF3Q9HD45 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
TM9SF3Q9HD45 TMEM229A-201ENST00000455783 2108 ntAPPRIS P1 BASIC26.03■■□□□ 1.76
TM9SF3Q9HD45 HES7-202ENST00000541682 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC26.03■■□□□ 1.76
TM9SF3Q9HD45 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC26.02■■□□□ 1.76
TM9SF3Q9HD45 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC26.02■■□□□ 1.76
TM9SF3Q9HD45 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
TM9SF3Q9HD45 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC26.01■■□□□ 1.75
TM9SF3Q9HD45 UCK1-201ENST00000372208 2063 ntTSL 1 (best) BASIC26■■□□□ 1.75
TM9SF3Q9HD45 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC26■■□□□ 1.75
TM9SF3Q9HD45 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC26■■□□□ 1.75
TM9SF3Q9HD45 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC26■■□□□ 1.75
TM9SF3Q9HD45 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC25.99■■□□□ 1.75
TM9SF3Q9HD45 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
TM9SF3Q9HD45 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC25.98■■□□□ 1.75
TM9SF3Q9HD45 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC25.98■■□□□ 1.75
TM9SF3Q9HD45 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
TM9SF3Q9HD45 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC25.97■■□□□ 1.75
TM9SF3Q9HD45 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC25.97■■□□□ 1.75
TM9SF3Q9HD45 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC25.96■■□□□ 1.75
TM9SF3Q9HD45 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
TM9SF3Q9HD45 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC25.95■■□□□ 1.74
TM9SF3Q9HD45 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC25.95■■□□□ 1.74
TM9SF3Q9HD45 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC25.95■■□□□ 1.74
TM9SF3Q9HD45 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC25.95■■□□□ 1.74
TM9SF3Q9HD45 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC25.94■■□□□ 1.74
TM9SF3Q9HD45 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.94■■□□□ 1.74
TM9SF3Q9HD45 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC25.94■■□□□ 1.74
TM9SF3Q9HD45 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC25.94■■□□□ 1.74
TM9SF3Q9HD45 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC25.94■■□□□ 1.74
TM9SF3Q9HD45 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC25.93■■□□□ 1.74
TM9SF3Q9HD45 AC009041.3-201ENST00000564390 879 ntTSL 5 BASIC25.93■■□□□ 1.74
TM9SF3Q9HD45 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC25.92■■□□□ 1.74
TM9SF3Q9HD45 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC25.92■■□□□ 1.74
TM9SF3Q9HD45 KHDRBS3-201ENST00000355849 1977 ntAPPRIS P1 TSL 1 (best) BASIC25.91■■□□□ 1.74
TM9SF3Q9HD45 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC25.91■■□□□ 1.74
TM9SF3Q9HD45 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC25.91■■□□□ 1.74
TM9SF3Q9HD45 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC25.91■■□□□ 1.74
TM9SF3Q9HD45 GKAP1-203ENST00000376371 1778 ntAPPRIS P1 TSL 1 (best) BASIC25.9■■□□□ 1.74
TM9SF3Q9HD45 MBOAT7-202ENST00000338624 2076 ntTSL 2 BASIC25.9■■□□□ 1.74
TM9SF3Q9HD45 LINC00273-201ENST00000539813 1452 ntBASIC25.9■■□□□ 1.74
TM9SF3Q9HD45 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC25.89■■□□□ 1.74
TM9SF3Q9HD45 AC010864.1-201ENST00000609407 1511 ntBASIC25.89■■□□□ 1.74
TM9SF3Q9HD45 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC25.89■■□□□ 1.74
TM9SF3Q9HD45 CHST11-202ENST00000546689 756 ntTSL 2 BASIC25.89■■□□□ 1.74
TM9SF3Q9HD45 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC25.89■■□□□ 1.74
TM9SF3Q9HD45 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
TM9SF3Q9HD45 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC25.88■■□□□ 1.73
TM9SF3Q9HD45 FTCD-203ENST00000397746 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.88■■□□□ 1.73
TM9SF3Q9HD45 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
TM9SF3Q9HD45 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
TM9SF3Q9HD45 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
TM9SF3Q9HD45 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
TM9SF3Q9HD45 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC25.88■■□□□ 1.73
TM9SF3Q9HD45 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
TM9SF3Q9HD45 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC25.88■■□□□ 1.73
TM9SF3Q9HD45 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
TM9SF3Q9HD45 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC25.88■■□□□ 1.73
TM9SF3Q9HD45 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC25.87■■□□□ 1.73
TM9SF3Q9HD45 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC25.86■■□□□ 1.73
TM9SF3Q9HD45 RPS20-211ENST00000524349 752 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
TM9SF3Q9HD45 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC25.86■■□□□ 1.73
TM9SF3Q9HD45 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.86■■□□□ 1.73
TM9SF3Q9HD45 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC25.86■■□□□ 1.73
TM9SF3Q9HD45 LRRC61-202ENST00000359623 1877 ntAPPRIS P1 TSL 2 BASIC25.85■■□□□ 1.73
TM9SF3Q9HD45 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC25.85■■□□□ 1.73
TM9SF3Q9HD45 SRP68-213ENST00000629930 165 ntTSL 5 BASIC25.85■■□□□ 1.73
TM9SF3Q9HD45 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC25.85■■□□□ 1.73
TM9SF3Q9HD45 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC25.84■■□□□ 1.73
TM9SF3Q9HD45 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC25.84■■□□□ 1.73
TM9SF3Q9HD45 ABHD17A-202ENST00000292577 1757 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
TM9SF3Q9HD45 UBA52-204ENST00000595158 743 ntAPPRIS P1 TSL 3 BASIC25.83■■□□□ 1.73
TM9SF3Q9HD45 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
TM9SF3Q9HD45 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
TM9SF3Q9HD45 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
TM9SF3Q9HD45 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC25.81■■□□□ 1.72
TM9SF3Q9HD45 CLTA-207ENST00000470744 1102 ntTSL 2 BASIC25.79■■□□□ 1.72
TM9SF3Q9HD45 GLTP-201ENST00000318348 2356 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
TM9SF3Q9HD45 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC25.78■■□□□ 1.72
TM9SF3Q9HD45 ELK4-201ENST00000289703 2118 ntTSL 1 (best) BASIC25.76■■□□□ 1.71
TM9SF3Q9HD45 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC25.75■■□□□ 1.71
TM9SF3Q9HD45 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
TM9SF3Q9HD45 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC25.74■■□□□ 1.71
TM9SF3Q9HD45 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC25.74■■□□□ 1.71
TM9SF3Q9HD45 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC25.74■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms