Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC26.39■■□□□ 1.82
VPS13AQ96RL7 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC26.39■■□□□ 1.82
VPS13AQ96RL7 AL035685.1-201ENST00000636663 812 ntBASIC26.39■■□□□ 1.81
VPS13AQ96RL7 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
VPS13AQ96RL7 RARRES2P1-201ENST00000474487 481 ntBASIC26.38■■□□□ 1.81
VPS13AQ96RL7 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
VPS13AQ96RL7 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
VPS13AQ96RL7 CTDNEP1-201ENST00000318988 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
VPS13AQ96RL7 ABHD17A-201ENST00000250974 1630 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
VPS13AQ96RL7 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC26.36■■□□□ 1.81
VPS13AQ96RL7 TGIF1-202ENST00000343820 2076 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
VPS13AQ96RL7 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC26.36■■□□□ 1.81
VPS13AQ96RL7 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC26.35■■□□□ 1.81
VPS13AQ96RL7 BTBD19-203ENST00000450269 1572 ntAPPRIS P1 TSL 5 BASIC26.35■■□□□ 1.81
VPS13AQ96RL7 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
VPS13AQ96RL7 SSBP4-202ENST00000348495 1721 ntAPPRIS ALT1 TSL 2 BASIC26.33■■□□□ 1.81
VPS13AQ96RL7 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
VPS13AQ96RL7 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
VPS13AQ96RL7 AC022413.1-201ENST00000624602 984 ntBASIC26.32■■□□□ 1.8
VPS13AQ96RL7 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
VPS13AQ96RL7 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC26.31■■□□□ 1.8
VPS13AQ96RL7 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC26.31■■□□□ 1.8
VPS13AQ96RL7 STK25-202ENST00000401869 2251 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
VPS13AQ96RL7 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC26.31■■□□□ 1.8
VPS13AQ96RL7 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
VPS13AQ96RL7 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
VPS13AQ96RL7 CHST11-202ENST00000546689 756 ntTSL 2 BASIC26.3■■□□□ 1.8
VPS13AQ96RL7 MYLIP-202ENST00000356840 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
VPS13AQ96RL7 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC26.29■■□□□ 1.8
VPS13AQ96RL7 KRT18P60-201ENST00000312876 1297 ntBASIC26.29■■□□□ 1.8
VPS13AQ96RL7 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC26.29■■□□□ 1.8
VPS13AQ96RL7 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC26.28■■□□□ 1.8
VPS13AQ96RL7 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC26.28■■□□□ 1.8
VPS13AQ96RL7 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
VPS13AQ96RL7 U85056.1-201ENST00000616429 682 ntBASIC26.28■■□□□ 1.8
VPS13AQ96RL7 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
VPS13AQ96RL7 EI24-212ENST00000615917 1407 ntTSL 2 BASIC26.25■■□□□ 1.79
VPS13AQ96RL7 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC26.25■■□□□ 1.79
VPS13AQ96RL7 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC26.24■■□□□ 1.79
VPS13AQ96RL7 TRIR-205ENST00000592273 783 ntTSL 3 BASIC26.24■■□□□ 1.79
VPS13AQ96RL7 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC26.23■■□□□ 1.79
VPS13AQ96RL7 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC26.22■■□□□ 1.79
VPS13AQ96RL7 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC26.21■■□□□ 1.79
VPS13AQ96RL7 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
VPS13AQ96RL7 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC26.21■■□□□ 1.79
VPS13AQ96RL7 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC26.21■■□□□ 1.79
VPS13AQ96RL7 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC26.2■■□□□ 1.78
VPS13AQ96RL7 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC26.2■■□□□ 1.78
VPS13AQ96RL7 AC004987.1-201ENST00000428627 508 ntBASIC26.19■■□□□ 1.78
VPS13AQ96RL7 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC26.19■■□□□ 1.78
VPS13AQ96RL7 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
VPS13AQ96RL7 AL451085.2-201ENST00000605085 799 ntBASIC26.18■■□□□ 1.78
VPS13AQ96RL7 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC26.17■■□□□ 1.78
VPS13AQ96RL7 IL1R1-201ENST00000409288 1735 ntTSL 5 BASIC26.17■■□□□ 1.78
VPS13AQ96RL7 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC26.16■■□□□ 1.78
VPS13AQ96RL7 ATP5G2P3-201ENST00000429083 425 ntBASIC26.16■■□□□ 1.78
VPS13AQ96RL7 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC26.16■■□□□ 1.78
VPS13AQ96RL7 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC26.15■■□□□ 1.78
VPS13AQ96RL7 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC26.15■■□□□ 1.78
VPS13AQ96RL7 PCYT2-206ENST00000571105 1628 ntTSL 5 BASIC26.15■■□□□ 1.78
VPS13AQ96RL7 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC26.14■■□□□ 1.78
VPS13AQ96RL7 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC26.14■■□□□ 1.77
VPS13AQ96RL7 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC26.13■■□□□ 1.77
VPS13AQ96RL7 KCNQ5-204ENST00000370392 1469 ntTSL 1 (best) BASIC26.13■■□□□ 1.77
VPS13AQ96RL7 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC26.12■■□□□ 1.77
VPS13AQ96RL7 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC26.12■■□□□ 1.77
VPS13AQ96RL7 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC26.11■■□□□ 1.77
VPS13AQ96RL7 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC26.11■■□□□ 1.77
VPS13AQ96RL7 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
VPS13AQ96RL7 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC26.11■■□□□ 1.77
VPS13AQ96RL7 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC26.11■■□□□ 1.77
VPS13AQ96RL7 LINC00273-201ENST00000539813 1452 ntBASIC26.1■■□□□ 1.77
VPS13AQ96RL7 GUK1-208ENST00000366728 842 ntTSL 2 BASIC26.1■■□□□ 1.77
VPS13AQ96RL7 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC26.1■■□□□ 1.77
VPS13AQ96RL7 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC26.09■■□□□ 1.77
VPS13AQ96RL7 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
VPS13AQ96RL7 AC060814.1-201ENST00000554326 538 ntBASIC26.09■■□□□ 1.77
VPS13AQ96RL7 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC26.09■■□□□ 1.77
VPS13AQ96RL7 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC26.09■■□□□ 1.77
VPS13AQ96RL7 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC26.09■■□□□ 1.77
VPS13AQ96RL7 AC092296.2-201ENST00000589470 999 ntBASIC26.08■■□□□ 1.77
VPS13AQ96RL7 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
VPS13AQ96RL7 PRKAR1B-201ENST00000360274 2007 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
VPS13AQ96RL7 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC26.05■■□□□ 1.76
VPS13AQ96RL7 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC26.04■■□□□ 1.76
VPS13AQ96RL7 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC26.04■■□□□ 1.76
VPS13AQ96RL7 SAMD1-202ENST00000533683 2164 ntAPPRIS P5 TSL 1 (best) BASIC26.04■■□□□ 1.76
VPS13AQ96RL7 HES4-202ENST00000428771 1040 ntTSL 2 BASIC26.03■■□□□ 1.76
VPS13AQ96RL7 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
VPS13AQ96RL7 PIK3R2-208ENST00000617642 1446 ntTSL 5 BASIC26.03■■□□□ 1.76
VPS13AQ96RL7 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
VPS13AQ96RL7 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC26.03■■□□□ 1.76
VPS13AQ96RL7 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
VPS13AQ96RL7 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
VPS13AQ96RL7 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
VPS13AQ96RL7 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
VPS13AQ96RL7 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC26.01■■□□□ 1.75
VPS13AQ96RL7 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC26.01■■□□□ 1.75
VPS13AQ96RL7 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC26.01■■□□□ 1.75
VPS13AQ96RL7 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 11.1 ms