Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC26.67■■□□□ 1.86
SHROOM3Q8TF72 SRSF9-201ENST00000229390 1201 ntAPPRIS P1 TSL 1 (best) BASIC26.67■■□□□ 1.86
SHROOM3Q8TF72 AC108673.1-201ENST00000510422 1159 ntBASIC26.67■■□□□ 1.86
SHROOM3Q8TF72 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC26.67■■□□□ 1.86
SHROOM3Q8TF72 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC26.66■■□□□ 1.86
SHROOM3Q8TF72 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC26.65■■□□□ 1.86
SHROOM3Q8TF72 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC26.65■■□□□ 1.86
SHROOM3Q8TF72 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC26.65■■□□□ 1.86
SHROOM3Q8TF72 ACTG1-210ENST00000575842 2256 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SHROOM3Q8TF72 PXDC1-202ENST00000380283 2190 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
SHROOM3Q8TF72 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
SHROOM3Q8TF72 ST6GALNAC6-203ENST00000373142 2448 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
SHROOM3Q8TF72 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC26.64■■□□□ 1.86
SHROOM3Q8TF72 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC26.64■■□□□ 1.86
SHROOM3Q8TF72 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC26.64■■□□□ 1.85
SHROOM3Q8TF72 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC26.63■■□□□ 1.85
SHROOM3Q8TF72 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
SHROOM3Q8TF72 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
SHROOM3Q8TF72 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC26.61■■□□□ 1.85
SHROOM3Q8TF72 UBE2S-203ENST00000589978 496 ntTSL 5 BASIC26.6■■□□□ 1.85
SHROOM3Q8TF72 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC26.6■■□□□ 1.85
SHROOM3Q8TF72 DOCK5-202ENST00000410074 786 ntTSL 2 BASIC26.6■■□□□ 1.85
SHROOM3Q8TF72 MBP-237ENST00000579129 1052 ntTSL 5 BASIC26.6■■□□□ 1.85
SHROOM3Q8TF72 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
SHROOM3Q8TF72 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
SHROOM3Q8TF72 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
SHROOM3Q8TF72 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC26.58■■□□□ 1.85
SHROOM3Q8TF72 HDGF-210ENST00000537739 2073 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
SHROOM3Q8TF72 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC26.58■■□□□ 1.84
SHROOM3Q8TF72 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC26.57■■□□□ 1.84
SHROOM3Q8TF72 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC26.57■■□□□ 1.84
SHROOM3Q8TF72 MISP3-202ENST00000587086 1535 ntAPPRIS P2 TSL 1 (best) BASIC26.57■■□□□ 1.84
SHROOM3Q8TF72 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
SHROOM3Q8TF72 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC26.56■■□□□ 1.84
SHROOM3Q8TF72 SHF-206ENST00000560471 2499 ntTSL 5 BASIC26.55■■□□□ 1.84
SHROOM3Q8TF72 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
SHROOM3Q8TF72 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC26.55■■□□□ 1.84
SHROOM3Q8TF72 BOD1-206ENST00000480951 814 ntTSL 2 BASIC26.55■■□□□ 1.84
SHROOM3Q8TF72 SPATA5L1-208ENST00000638607 1863 ntTSL 2 BASIC26.54■■□□□ 1.84
SHROOM3Q8TF72 MIR6090-201ENST00000622481 60 ntBASIC26.54■■□□□ 1.84
SHROOM3Q8TF72 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC26.54■■□□□ 1.84
SHROOM3Q8TF72 DTNBP1-202ENST00000344537 1403 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
SHROOM3Q8TF72 AL139393.2-201ENST00000608721 2025 ntBASIC26.53■■□□□ 1.84
SHROOM3Q8TF72 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
SHROOM3Q8TF72 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
SHROOM3Q8TF72 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC26.52■■□□□ 1.84
SHROOM3Q8TF72 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC26.52■■□□□ 1.84
SHROOM3Q8TF72 MTCH1-202ENST00000373627 2057 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
SHROOM3Q8TF72 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
SHROOM3Q8TF72 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
SHROOM3Q8TF72 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
SHROOM3Q8TF72 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
SHROOM3Q8TF72 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
SHROOM3Q8TF72 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
SHROOM3Q8TF72 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
SHROOM3Q8TF72 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
SHROOM3Q8TF72 WSB2-201ENST00000315436 2646 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
SHROOM3Q8TF72 AC127502.1-201ENST00000399971 1502 ntBASIC26.47■■□□□ 1.83
SHROOM3Q8TF72 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC26.47■■□□□ 1.83
SHROOM3Q8TF72 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
SHROOM3Q8TF72 LINC00273-201ENST00000539813 1452 ntBASIC26.47■■□□□ 1.83
SHROOM3Q8TF72 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
SHROOM3Q8TF72 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
SHROOM3Q8TF72 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
SHROOM3Q8TF72 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
SHROOM3Q8TF72 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
SHROOM3Q8TF72 EI24-212ENST00000615917 1407 ntTSL 2 BASIC26.43■■□□□ 1.82
SHROOM3Q8TF72 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
SHROOM3Q8TF72 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC26.43■■□□□ 1.82
SHROOM3Q8TF72 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC26.43■■□□□ 1.82
SHROOM3Q8TF72 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
SHROOM3Q8TF72 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
SHROOM3Q8TF72 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC26.42■■□□□ 1.82
SHROOM3Q8TF72 AC135983.2-203ENST00000454486 1613 ntBASIC26.42■■□□□ 1.82
SHROOM3Q8TF72 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
SHROOM3Q8TF72 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC26.41■■□□□ 1.82
SHROOM3Q8TF72 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
SHROOM3Q8TF72 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC26.41■■□□□ 1.82
SHROOM3Q8TF72 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC26.41■■□□□ 1.82
SHROOM3Q8TF72 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
SHROOM3Q8TF72 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
SHROOM3Q8TF72 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC26.41■■□□□ 1.82
SHROOM3Q8TF72 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC26.4■■□□□ 1.82
SHROOM3Q8TF72 DRD5P2-201ENST00000421395 2012 ntBASIC26.4■■□□□ 1.82
SHROOM3Q8TF72 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
SHROOM3Q8TF72 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC26.4■■□□□ 1.82
SHROOM3Q8TF72 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC26.39■■□□□ 1.82
SHROOM3Q8TF72 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
SHROOM3Q8TF72 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC26.39■■□□□ 1.81
SHROOM3Q8TF72 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC26.38■■□□□ 1.81
SHROOM3Q8TF72 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
SHROOM3Q8TF72 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
SHROOM3Q8TF72 KANSL1L-207ENST00000452086 2334 ntTSL 1 (best) BASIC26.37■■□□□ 1.81
SHROOM3Q8TF72 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
SHROOM3Q8TF72 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
SHROOM3Q8TF72 WHAMMP2-203ENST00000563942 1603 ntBASIC26.35■■□□□ 1.81
SHROOM3Q8TF72 CIB2-204ENST00000557846 934 ntTSL 3 BASIC26.35■■□□□ 1.81
SHROOM3Q8TF72 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC26.34■■□□□ 1.81
SHROOM3Q8TF72 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
SHROOM3Q8TF72 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC26.34■■□□□ 1.81
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms