Protein–RNA interactions for Protein: Q6IN85

PPP4R3A, Serine/threonine-protein phosphatase 4 regulatory subunit 3A, humanhuman

Predictions only

Length 833 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R3AQ6IN85 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
PPP4R3AQ6IN85 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC29.5■■■□□ 2.31
PPP4R3AQ6IN85 PGM5P2-201ENST00000613141 1980 ntTSL 1 (best) BASIC29.5■■■□□ 2.31
PPP4R3AQ6IN85 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC29.5■■■□□ 2.31
PPP4R3AQ6IN85 ATF4-201ENST00000337304 2019 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
PPP4R3AQ6IN85 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC29.49■■■□□ 2.31
PPP4R3AQ6IN85 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC29.49■■■□□ 2.31
PPP4R3AQ6IN85 DUX4L29-201ENST00000425409 679 ntBASIC29.49■■■□□ 2.31
PPP4R3AQ6IN85 AC021231.2-201ENST00000594613 730 ntBASIC29.49■■■□□ 2.31
PPP4R3AQ6IN85 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC29.49■■■□□ 2.31
PPP4R3AQ6IN85 RUNDC3A-206ENST00000590941 1675 ntTSL 1 (best) BASIC29.47■■■□□ 2.31
PPP4R3AQ6IN85 LZTS2-201ENST00000370220 5741 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PPP4R3AQ6IN85 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC29.47■■■□□ 2.31
PPP4R3AQ6IN85 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
PPP4R3AQ6IN85 RCC1L-202ENST00000614461 2419 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
PPP4R3AQ6IN85 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC29.46■■■□□ 2.31
PPP4R3AQ6IN85 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC29.46■■■□□ 2.31
PPP4R3AQ6IN85 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC29.46■■■□□ 2.31
PPP4R3AQ6IN85 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC29.46■■■□□ 2.31
PPP4R3AQ6IN85 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC29.45■■■□□ 2.31
PPP4R3AQ6IN85 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC29.45■■■□□ 2.31
PPP4R3AQ6IN85 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC29.45■■■□□ 2.3
PPP4R3AQ6IN85 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC29.44■■■□□ 2.3
PPP4R3AQ6IN85 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC29.44■■■□□ 2.3
PPP4R3AQ6IN85 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC29.44■■■□□ 2.3
PPP4R3AQ6IN85 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC29.44■■■□□ 2.3
PPP4R3AQ6IN85 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC29.44■■■□□ 2.3
PPP4R3AQ6IN85 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC29.44■■■□□ 2.3
PPP4R3AQ6IN85 MATK-201ENST00000310132 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC29.44■■■□□ 2.3
PPP4R3AQ6IN85 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC29.44■■■□□ 2.3
PPP4R3AQ6IN85 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC29.43■■■□□ 2.3
PPP4R3AQ6IN85 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC29.43■■■□□ 2.3
PPP4R3AQ6IN85 HGH1-207ENST00000628266 258 ntTSL 5 BASIC29.43■■■□□ 2.3
PPP4R3AQ6IN85 MLEC-202ENST00000412616 841 ntTSL 3 BASIC29.42■■■□□ 2.3
PPP4R3AQ6IN85 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC29.42■■■□□ 2.3
PPP4R3AQ6IN85 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC29.42■■■□□ 2.3
PPP4R3AQ6IN85 AL139393.2-201ENST00000608721 2025 ntBASIC29.42■■■□□ 2.3
PPP4R3AQ6IN85 QDPR-201ENST00000281243 1648 ntAPPRIS P1 TSL 1 (best) BASIC29.42■■■□□ 2.3
PPP4R3AQ6IN85 RTN2-201ENST00000245923 2293 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
PPP4R3AQ6IN85 TRAM2-AS1-201ENST00000453216 664 ntTSL 3 BASIC29.41■■■□□ 2.3
PPP4R3AQ6IN85 VEGFA-226ENST00000611736 1239 ntTSL 1 (best) BASIC29.41■■■□□ 2.3
PPP4R3AQ6IN85 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
PPP4R3AQ6IN85 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC29.4■■■□□ 2.3
PPP4R3AQ6IN85 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC29.4■■■□□ 2.3
PPP4R3AQ6IN85 LINC00273-201ENST00000539813 1452 ntBASIC29.4■■■□□ 2.3
PPP4R3AQ6IN85 CCZ1B-215ENST00000626257 2211 ntTSL 2 BASIC29.4■■■□□ 2.3
PPP4R3AQ6IN85 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
PPP4R3AQ6IN85 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC29.39■■■□□ 2.3
PPP4R3AQ6IN85 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC29.39■■■□□ 2.3
PPP4R3AQ6IN85 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC29.38■■■□□ 2.29
PPP4R3AQ6IN85 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC29.38■■■□□ 2.29
PPP4R3AQ6IN85 ABCB10P3-201ENST00000561950 2166 ntBASIC29.37■■■□□ 2.29
PPP4R3AQ6IN85 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC29.37■■■□□ 2.29
PPP4R3AQ6IN85 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC29.37■■■□□ 2.29
PPP4R3AQ6IN85 CALM3-209ENST00000597743 577 ntTSL 4 BASIC29.37■■■□□ 2.29
PPP4R3AQ6IN85 AP004833.2-201ENST00000532228 1454 ntBASIC29.36■■■□□ 2.29
PPP4R3AQ6IN85 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC29.36■■■□□ 2.29
PPP4R3AQ6IN85 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC29.36■■■□□ 2.29
PPP4R3AQ6IN85 PRSS41-201ENST00000399677 1127 ntAPPRIS P1 TSL 5 BASIC29.36■■■□□ 2.29
PPP4R3AQ6IN85 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC29.36■■■□□ 2.29
PPP4R3AQ6IN85 HOXD13-201ENST00000392539 2240 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
PPP4R3AQ6IN85 MAD2L2-207ENST00000376692 1118 ntAPPRIS P1 TSL 1 (best) BASIC29.35■■■□□ 2.29
PPP4R3AQ6IN85 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC29.35■■■□□ 2.29
PPP4R3AQ6IN85 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC29.35■■■□□ 2.29
PPP4R3AQ6IN85 U2AF1L5-201ENST00000610664 897 ntAPPRIS P5 TSL 1 (best) BASIC29.34■■■□□ 2.29
PPP4R3AQ6IN85 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC29.34■■■□□ 2.29
PPP4R3AQ6IN85 PIP4K2B-204ENST00000619039 5734 ntAPPRIS P1 TSL 1 (best) BASIC29.33■■■□□ 2.29
PPP4R3AQ6IN85 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC29.33■■■□□ 2.29
PPP4R3AQ6IN85 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC29.33■■■□□ 2.29
PPP4R3AQ6IN85 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC29.33■■■□□ 2.29
PPP4R3AQ6IN85 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC29.33■■■□□ 2.29
PPP4R3AQ6IN85 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC29.33■■■□□ 2.29
PPP4R3AQ6IN85 ABHD17AP4-201ENST00000411545 909 ntBASIC29.32■■■□□ 2.28
PPP4R3AQ6IN85 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC29.32■■■□□ 2.28
PPP4R3AQ6IN85 AC135983.2-203ENST00000454486 1613 ntBASIC29.31■■■□□ 2.28
PPP4R3AQ6IN85 JAG2-201ENST00000331782 5835 ntAPPRIS P1 TSL 1 (best) BASIC29.31■■■□□ 2.28
PPP4R3AQ6IN85 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC29.31■■■□□ 2.28
PPP4R3AQ6IN85 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC29.3■■■□□ 2.28
PPP4R3AQ6IN85 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC29.3■■■□□ 2.28
PPP4R3AQ6IN85 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC29.29■■■□□ 2.28
PPP4R3AQ6IN85 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC29.29■■■□□ 2.28
PPP4R3AQ6IN85 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC29.28■■■□□ 2.28
PPP4R3AQ6IN85 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC29.28■■■□□ 2.28
PPP4R3AQ6IN85 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC29.27■■■□□ 2.28
PPP4R3AQ6IN85 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC29.27■■■□□ 2.28
PPP4R3AQ6IN85 TPRA1-209ENST00000489960 1903 ntAPPRIS P1 TSL 5 BASIC29.27■■■□□ 2.28
PPP4R3AQ6IN85 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC29.26■■■□□ 2.27
PPP4R3AQ6IN85 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC29.26■■■□□ 2.27
PPP4R3AQ6IN85 ZNRF2P2-203ENST00000454624 420 ntBASIC29.26■■■□□ 2.27
PPP4R3AQ6IN85 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC29.26■■■□□ 2.27
PPP4R3AQ6IN85 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC29.26■■■□□ 2.27
PPP4R3AQ6IN85 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC29.25■■■□□ 2.27
PPP4R3AQ6IN85 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC29.25■■■□□ 2.27
PPP4R3AQ6IN85 WHAMMP2-203ENST00000563942 1603 ntBASIC29.24■■■□□ 2.27
PPP4R3AQ6IN85 AC139426.1-201ENST00000568218 2529 ntBASIC29.24■■■□□ 2.27
PPP4R3AQ6IN85 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC29.24■■■□□ 2.27
PPP4R3AQ6IN85 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC29.24■■■□□ 2.27
PPP4R3AQ6IN85 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC29.24■■■□□ 2.27
PPP4R3AQ6IN85 SLC30A10-202ENST00000366926 1915 ntAPPRIS P1 TSL 1 (best) BASIC29.23■■■□□ 2.27
PPP4R3AQ6IN85 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC29.23■■■□□ 2.27
Retrieved 100 of 98,524 protein–RNA pairs in 128.3 ms