Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trav5d-4Q5R1F6 Crip2-201ENSMUST00000084882 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
Trav5d-4Q5R1F6 Dtnbp1-201ENSMUST00000072329 1362 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
Trav5d-4Q5R1F6 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trav5d-4Q5R1F6 Adgrb1-203ENSMUST00000185682 2744 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
Trav5d-4Q5R1F6 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
Trav5d-4Q5R1F6 Panx2-202ENSMUST00000161372 2314 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
Trav5d-4Q5R1F6 Gpr27-201ENSMUST00000101122 2388 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
Trav5d-4Q5R1F6 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trav5d-4Q5R1F6 Fam120a-201ENSMUST00000060805 5105 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
Trav5d-4Q5R1F6 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
Trav5d-4Q5R1F6 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
Trav5d-4Q5R1F6 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
Trav5d-4Q5R1F6 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
Trav5d-4Q5R1F6 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trav5d-4Q5R1F6 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trav5d-4Q5R1F6 Mxra7-202ENSMUST00000047715 757 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
Trav5d-4Q5R1F6 Igfbp3-202ENSMUST00000135887 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trav5d-4Q5R1F6 Nrtn-201ENSMUST00000044752 1023 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
Trav5d-4Q5R1F6 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Trav5d-4Q5R1F6 Rpsa-204ENSMUST00000217317 1599 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trav5d-4Q5R1F6 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
Trav5d-4Q5R1F6 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
Trav5d-4Q5R1F6 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
Trav5d-4Q5R1F6 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
Trav5d-4Q5R1F6 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
Trav5d-4Q5R1F6 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC20.4■□□□□ 0.86
Trav5d-4Q5R1F6 Dut-202ENSMUST00000082122 1020 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
Trav5d-4Q5R1F6 AC153890.1-201ENSMUST00000220021 2469 ntBASIC20.39■□□□□ 0.86
Trav5d-4Q5R1F6 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
Trav5d-4Q5R1F6 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
Trav5d-4Q5R1F6 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trav5d-4Q5R1F6 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trav5d-4Q5R1F6 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
Trav5d-4Q5R1F6 Paqr3-202ENSMUST00000112968 1875 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
Trav5d-4Q5R1F6 C1qtnf5-201ENSMUST00000114815 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trav5d-4Q5R1F6 Gm527-203ENSMUST00000220993 1090 ntTSL 5 BASIC20.37■□□□□ 0.85
Trav5d-4Q5R1F6 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC20.37■□□□□ 0.85
Trav5d-4Q5R1F6 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Trav5d-4Q5R1F6 Gpr137c-205ENSMUST00000227009 771 ntAPPRIS ALT2 BASIC20.36■□□□□ 0.85
Trav5d-4Q5R1F6 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Trav5d-4Q5R1F6 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC20.36■□□□□ 0.85
Trav5d-4Q5R1F6 Chrna5-204ENSMUST00000217408 2446 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Trav5d-4Q5R1F6 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trav5d-4Q5R1F6 Osbpl1a-209ENSMUST00000122175 1203 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Trav5d-4Q5R1F6 Smarcc2-205ENSMUST00000218228 603 ntTSL 5 BASIC20.35■□□□□ 0.85
Trav5d-4Q5R1F6 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Trav5d-4Q5R1F6 Fus-201ENSMUST00000077609 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trav5d-4Q5R1F6 Bckdhb-201ENSMUST00000034801 1472 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Trav5d-4Q5R1F6 Frat2-201ENSMUST00000059231 2161 ntAPPRIS P1 BASIC20.34■□□□□ 0.85
Trav5d-4Q5R1F6 Gm20503-201ENSMUST00000174664 1294 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.85
Trav5d-4Q5R1F6 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
Trav5d-4Q5R1F6 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trav5d-4Q5R1F6 Bckdhb-206ENSMUST00000190637 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Trav5d-4Q5R1F6 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Trav5d-4Q5R1F6 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Trav5d-4Q5R1F6 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trav5d-4Q5R1F6 Gng13-201ENSMUST00000115108 347 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trav5d-4Q5R1F6 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
Trav5d-4Q5R1F6 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC20.31■□□□□ 0.84
Trav5d-4Q5R1F6 Rnf115-201ENSMUST00000029740 2209 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Trav5d-4Q5R1F6 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC20.3■□□□□ 0.84
Trav5d-4Q5R1F6 Cpe-201ENSMUST00000048967 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav5d-4Q5R1F6 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trav5d-4Q5R1F6 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav5d-4Q5R1F6 Mpp6-209ENSMUST00000204545 2418 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
Trav5d-4Q5R1F6 Tnfsfm13-201ENSMUST00000108649 1049 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Trav5d-4Q5R1F6 Tcte3-201ENSMUST00000040746 788 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav5d-4Q5R1F6 Tcte3-202ENSMUST00000097398 632 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Trav5d-4Q5R1F6 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
Trav5d-4Q5R1F6 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC20.29■□□□□ 0.84
Trav5d-4Q5R1F6 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Trav5d-4Q5R1F6 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trav5d-4Q5R1F6 Sox3-201ENSMUST00000135107 2065 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
Trav5d-4Q5R1F6 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
Trav5d-4Q5R1F6 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC20.27■□□□□ 0.84
Trav5d-4Q5R1F6 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
Trav5d-4Q5R1F6 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
Trav5d-4Q5R1F6 5031425E22Rik-201ENSMUST00000101522 2110 ntBASIC20.26■□□□□ 0.83
Trav5d-4Q5R1F6 Uba52-205ENSMUST00000129909 705 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
Trav5d-4Q5R1F6 Gm9887-201ENSMUST00000053451 624 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Trav5d-4Q5R1F6 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
Trav5d-4Q5R1F6 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
Trav5d-4Q5R1F6 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
Trav5d-4Q5R1F6 Nans-201ENSMUST00000030018 2179 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav5d-4Q5R1F6 Gm30023-201ENSMUST00000197970 889 ntBASIC20.25■□□□□ 0.83
Trav5d-4Q5R1F6 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav5d-4Q5R1F6 Stard3nl-201ENSMUST00000039694 1327 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Trav5d-4Q5R1F6 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Trav5d-4Q5R1F6 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
Trav5d-4Q5R1F6 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC20.24■□□□□ 0.83
Trav5d-4Q5R1F6 Grasp-201ENSMUST00000000543 2013 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trav5d-4Q5R1F6 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Trav5d-4Q5R1F6 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
Trav5d-4Q5R1F6 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Trav5d-4Q5R1F6 Ei24-202ENSMUST00000163192 2309 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Trav5d-4Q5R1F6 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trav5d-4Q5R1F6 A330023F24Rik-201ENSMUST00000181226 955 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Trav5d-4Q5R1F6 Ppp1r14b-201ENSMUST00000070850 919 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Trav5d-4Q5R1F6 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Retrieved 100 of 76,532 protein–RNA pairs in 7.9 ms