Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Otud5-205ENSMUST00000115668 2543 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trav6-3Q5R1E6 Csnk1g2-201ENSMUST00000079773 2348 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
Trav6-3Q5R1E6 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
Trav6-3Q5R1E6 Gm43863-201ENSMUST00000203822 1192 ntBASIC19.21■□□□□ 0.67
Trav6-3Q5R1E6 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav6-3Q5R1E6 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav6-3Q5R1E6 Zmynd12-201ENSMUST00000094819 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Trav6-3Q5R1E6 Tmem260-208ENSMUST00000226400 2281 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
Trav6-3Q5R1E6 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
Trav6-3Q5R1E6 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Trav6-3Q5R1E6 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
Trav6-3Q5R1E6 Fam149b-202ENSMUST00000051915 1981 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
Trav6-3Q5R1E6 Sys1-201ENSMUST00000072452 1606 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trav6-3Q5R1E6 Fam168b-201ENSMUST00000047534 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trav6-3Q5R1E6 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trav6-3Q5R1E6 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Trav6-3Q5R1E6 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trav6-3Q5R1E6 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trav6-3Q5R1E6 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
Trav6-3Q5R1E6 Dleu2-206ENSMUST00000182537 318 ntTSL 2 BASIC19.18■□□□□ 0.66
Trav6-3Q5R1E6 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
Trav6-3Q5R1E6 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC19.18■□□□□ 0.66
Trav6-3Q5R1E6 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Trav6-3Q5R1E6 Fzd9-201ENSMUST00000062572 2293 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
Trav6-3Q5R1E6 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
Trav6-3Q5R1E6 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Trav6-3Q5R1E6 Pdss1-201ENSMUST00000053729 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav6-3Q5R1E6 Zfp131-205ENSMUST00000223812 663 ntBASIC19.16■□□□□ 0.66
Trav6-3Q5R1E6 AC157572.2-201ENSMUST00000226970 908 ntBASIC19.16■□□□□ 0.66
Trav6-3Q5R1E6 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
Trav6-3Q5R1E6 Tnfsfm13-203ENSMUST00000180587 2235 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
Trav6-3Q5R1E6 Foxc1-201ENSMUST00000062292 5844 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
Trav6-3Q5R1E6 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
Trav6-3Q5R1E6 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC19.14■□□□□ 0.65
Trav6-3Q5R1E6 1700016A09Rik-201ENSMUST00000192004 835 ntBASIC19.14■□□□□ 0.65
Trav6-3Q5R1E6 Msi2-202ENSMUST00000107908 695 ntTSL 5 BASIC19.13■□□□□ 0.65
Trav6-3Q5R1E6 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC19.13■□□□□ 0.65
Trav6-3Q5R1E6 Pm20d2-201ENSMUST00000098181 1445 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
Trav6-3Q5R1E6 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
Trav6-3Q5R1E6 Stard10-203ENSMUST00000164479 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trav6-3Q5R1E6 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
Trav6-3Q5R1E6 Vdac1-202ENSMUST00000102758 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav6-3Q5R1E6 Gas7-203ENSMUST00000108681 1595 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Trav6-3Q5R1E6 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Trav6-3Q5R1E6 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC19.09■□□□□ 0.65
Trav6-3Q5R1E6 Zfp513-202ENSMUST00000114590 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav6-3Q5R1E6 P2rx2-205ENSMUST00000200037 1569 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav6-3Q5R1E6 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC19.09■□□□□ 0.65
Trav6-3Q5R1E6 Six3-201ENSMUST00000162695 2838 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.65
Trav6-3Q5R1E6 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Trav6-3Q5R1E6 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC19.08■□□□□ 0.65
Trav6-3Q5R1E6 Gm45580-201ENSMUST00000210430 889 ntTSL 5 BASIC19.08■□□□□ 0.64
Trav6-3Q5R1E6 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Trav6-3Q5R1E6 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Trav6-3Q5R1E6 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC19.07■□□□□ 0.64
Trav6-3Q5R1E6 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC19.06■□□□□ 0.64
Trav6-3Q5R1E6 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
Trav6-3Q5R1E6 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC19.06■□□□□ 0.64
Trav6-3Q5R1E6 Gm24970-201ENSMUST00000175582 82 ntBASIC19.05■□□□□ 0.64
Trav6-3Q5R1E6 Gm9397-201ENSMUST00000200125 605 ntBASIC19.05■□□□□ 0.64
Trav6-3Q5R1E6 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav6-3Q5R1E6 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC19.05■□□□□ 0.64
Trav6-3Q5R1E6 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trav6-3Q5R1E6 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trav6-3Q5R1E6 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Trav6-3Q5R1E6 Gm26508-201ENSMUST00000181285 1516 ntTSL 5 BASIC19.04■□□□□ 0.64
Trav6-3Q5R1E6 4930577N17Rik-201ENSMUST00000139771 1625 ntBASIC19.03■□□□□ 0.64
Trav6-3Q5R1E6 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav6-3Q5R1E6 AC122428.3-201ENSMUST00000215551 2290 ntBASIC19.03■□□□□ 0.64
Trav6-3Q5R1E6 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav6-3Q5R1E6 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Trav6-3Q5R1E6 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Trav6-3Q5R1E6 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.63
Trav6-3Q5R1E6 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC19.01■□□□□ 0.63
Trav6-3Q5R1E6 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC19.01■□□□□ 0.63
Trav6-3Q5R1E6 Eya2-202ENSMUST00000088132 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Trav6-3Q5R1E6 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC19■□□□□ 0.63
Trav6-3Q5R1E6 Zxdc-201ENSMUST00000045740 1612 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Trav6-3Q5R1E6 Dlx6os2-201ENSMUST00000178206 1354 ntBASIC18.99■□□□□ 0.63
Trav6-3Q5R1E6 Tdp2-203ENSMUST00000223804 1136 ntBASIC18.99■□□□□ 0.63
Trav6-3Q5R1E6 E130218I03Rik-208ENSMUST00000144222 1729 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trav6-3Q5R1E6 Adra1d-201ENSMUST00000103184 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trav6-3Q5R1E6 Slc16a11-201ENSMUST00000094055 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Trav6-3Q5R1E6 Ccna1-202ENSMUST00000197238 1719 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Trav6-3Q5R1E6 Gal3st1-202ENSMUST00000078757 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav6-3Q5R1E6 Hoxb3os-202ENSMUST00000147410 1945 ntTSL 5 BASIC18.97■□□□□ 0.63
Trav6-3Q5R1E6 D030046N08Rik-201ENSMUST00000162318 1570 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
Trav6-3Q5R1E6 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Trav6-3Q5R1E6 Actr3b-202ENSMUST00000128727 2031 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Trav6-3Q5R1E6 Crls1-201ENSMUST00000028835 1924 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trav6-3Q5R1E6 Suv39h2-202ENSMUST00000060618 1831 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Trav6-3Q5R1E6 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC18.96■□□□□ 0.63
Trav6-3Q5R1E6 Cdv3-205ENSMUST00000189896 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trav6-3Q5R1E6 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Trav6-3Q5R1E6 Cpsf4-205ENSMUST00000160629 1713 ntAPPRIS ALT1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav6-3Q5R1E6 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Trav6-3Q5R1E6 Gna13-202ENSMUST00000106702 914 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Trav6-3Q5R1E6 Map3k10-204ENSMUST00000138243 1621 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Trav6-3Q5R1E6 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Trav6-3Q5R1E6 A530058N18Rik-203ENSMUST00000135729 1405 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms