Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
NKX2-1P43699 TMEM200C-201ENST00000383490 1920 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
NKX2-1P43699 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NKX2-1P43699 PELI3-203ENST00000524466 1671 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
NKX2-1P43699 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
NKX2-1P43699 SLC9A3R2-202ENST00000432365 1564 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
NKX2-1P43699 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC21.1■□□□□ 0.97
NKX2-1P43699 MXD3-203ENST00000439742 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
NKX2-1P43699 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
NKX2-1P43699 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC21.1■□□□□ 0.97
NKX2-1P43699 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
NKX2-1P43699 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NKX2-1P43699 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
NKX2-1P43699 GAL3ST1-204ENST00000402369 1712 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
NKX2-1P43699 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NKX2-1P43699 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
NKX2-1P43699 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NKX2-1P43699 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NKX2-1P43699 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
NKX2-1P43699 BX255925.1-201ENST00000566954 1854 ntBASIC21.08■□□□□ 0.97
NKX2-1P43699 C17orf97-201ENST00000360127 1839 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
NKX2-1P43699 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NKX2-1P43699 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
NKX2-1P43699 AL031258.1-201ENST00000623562 325 ntBASIC21.07■□□□□ 0.96
NKX2-1P43699 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-1P43699 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NKX2-1P43699 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21.06■□□□□ 0.96
NKX2-1P43699 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC21.05■□□□□ 0.96
NKX2-1P43699 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-1P43699 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-1P43699 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NKX2-1P43699 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-1P43699 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NKX2-1P43699 AC135731.1-201ENST00000569415 2548 ntBASIC21.04■□□□□ 0.96
NKX2-1P43699 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.03■□□□□ 0.96
NKX2-1P43699 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
NKX2-1P43699 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC21.03■□□□□ 0.96
NKX2-1P43699 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
NKX2-1P43699 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
NKX2-1P43699 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NKX2-1P43699 WASH5P-204ENST00000632292 975 ntBASIC21.02■□□□□ 0.96
NKX2-1P43699 AC010864.1-201ENST00000609407 1511 ntBASIC21.02■□□□□ 0.96
NKX2-1P43699 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
NKX2-1P43699 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
NKX2-1P43699 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NKX2-1P43699 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NKX2-1P43699 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NKX2-1P43699 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC21.01■□□□□ 0.95
NKX2-1P43699 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NKX2-1P43699 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21.01■□□□□ 0.95
NKX2-1P43699 AGPAT2-202ENST00000371696 1512 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NKX2-1P43699 CLEC3B-201ENST00000296130 936 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NKX2-1P43699 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NKX2-1P43699 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC21■□□□□ 0.95
NKX2-1P43699 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC21■□□□□ 0.95
NKX2-1P43699 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC20.99■□□□□ 0.95
NKX2-1P43699 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-1P43699 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-1P43699 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC20.99■□□□□ 0.95
NKX2-1P43699 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
NKX2-1P43699 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
NKX2-1P43699 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC20.99■□□□□ 0.95
NKX2-1P43699 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
NKX2-1P43699 PROC-203ENST00000409048 1586 ntTSL 5 BASIC20.98■□□□□ 0.95
NKX2-1P43699 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC20.98■□□□□ 0.95
NKX2-1P43699 PCK2-202ENST00000396973 1830 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
NKX2-1P43699 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
NKX2-1P43699 SHF-208ENST00000560734 1731 ntTSL 3 BASIC20.98■□□□□ 0.95
NKX2-1P43699 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC20.97■□□□□ 0.95
NKX2-1P43699 HDHD5-202ENST00000336737 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-1P43699 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC20.97■□□□□ 0.95
NKX2-1P43699 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-1P43699 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-1P43699 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-1P43699 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
NKX2-1P43699 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-1P43699 AP002365.1-201ENST00000603448 772 ntBASIC20.95■□□□□ 0.94
NKX2-1P43699 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
NKX2-1P43699 CPTP-201ENST00000343938 2190 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
NKX2-1P43699 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
NKX2-1P43699 TRADD-201ENST00000345057 1877 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-1P43699 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC20.94■□□□□ 0.94
NKX2-1P43699 CDKN2D-202ENST00000393599 1422 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NKX2-1P43699 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-1P43699 DNAJB2-202ENST00000392086 1946 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
NKX2-1P43699 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC20.93■□□□□ 0.94
NKX2-1P43699 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NKX2-1P43699 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-1P43699 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-1P43699 FAAP20-204ENST00000400919 1413 ntTSL 3 BASIC20.92■□□□□ 0.94
NKX2-1P43699 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-1P43699 STUB1-205ENST00000565677 1560 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-1P43699 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
NKX2-1P43699 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
NKX2-1P43699 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC20.91■□□□□ 0.94
NKX2-1P43699 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
NKX2-1P43699 AP004833.2-201ENST00000532228 1454 ntBASIC20.9■□□□□ 0.94
NKX2-1P43699 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
NKX2-1P43699 ANKRD65-205ENST00000537107 2190 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.94
NKX2-1P43699 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms