Protein–RNA interactions for Protein: P35542

SAA4, Serum amyloid A-4 protein, humanhuman

Predictions only

Length 130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SAA4P35542 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SAA4P35542 HLA-V-202ENST00000446817 847 ntBASIC21.07■□□□□ 0.96
SAA4P35542 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SAA4P35542 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SAA4P35542 ST7-AS1-201ENST00000456775 1889 ntBASIC21.07■□□□□ 0.96
SAA4P35542 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SAA4P35542 LINC00273-201ENST00000539813 1452 ntBASIC21.06■□□□□ 0.96
SAA4P35542 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC21.05■□□□□ 0.96
SAA4P35542 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SAA4P35542 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SAA4P35542 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC21.05■□□□□ 0.96
SAA4P35542 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC21.05■□□□□ 0.96
SAA4P35542 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC21.05■□□□□ 0.96
SAA4P35542 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC21.05■□□□□ 0.96
SAA4P35542 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SAA4P35542 TMEM251-202ENST00000415050 1303 ntTSL 2 BASIC21.04■□□□□ 0.96
SAA4P35542 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC21.04■□□□□ 0.96
SAA4P35542 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
SAA4P35542 MACF1-219ENST00000484793 834 ntTSL 2 BASIC21.04■□□□□ 0.96
SAA4P35542 MBP-237ENST00000579129 1052 ntTSL 5 BASIC21.04■□□□□ 0.96
SAA4P35542 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
SAA4P35542 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC21.03■□□□□ 0.96
SAA4P35542 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC21.02■□□□□ 0.96
SAA4P35542 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC21.02■□□□□ 0.96
SAA4P35542 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC21.02■□□□□ 0.96
SAA4P35542 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SAA4P35542 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC21.02■□□□□ 0.96
SAA4P35542 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
SAA4P35542 ST7-202ENST00000323984 2142 ntTSL 5 BASIC21.02■□□□□ 0.96
SAA4P35542 ST7-207ENST00000393449 2127 ntTSL 5 BASIC21.02■□□□□ 0.96
SAA4P35542 AGPS-202ENST00000409888 815 ntTSL 4 BASIC21.01■□□□□ 0.95
SAA4P35542 ARMC10-211ENST00000541300 2266 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
SAA4P35542 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC21■□□□□ 0.95
SAA4P35542 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC21■□□□□ 0.95
SAA4P35542 GDI1-215ENST00000630693 786 ntTSL 4 BASIC21■□□□□ 0.95
SAA4P35542 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
SAA4P35542 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC21■□□□□ 0.95
SAA4P35542 MIR3648-2-201ENST00000581792 180 ntBASIC20.99■□□□□ 0.95
SAA4P35542 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC20.99■□□□□ 0.95
SAA4P35542 MIR3648-1-201ENST00000615959 180 ntBASIC20.99■□□□□ 0.95
SAA4P35542 CR559946.2-201ENST00000623684 991 ntBASIC20.99■□□□□ 0.95
SAA4P35542 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SAA4P35542 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC20.98■□□□□ 0.95
SAA4P35542 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
SAA4P35542 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC20.98■□□□□ 0.95
SAA4P35542 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SAA4P35542 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SAA4P35542 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
SAA4P35542 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SAA4P35542 DUX4L13-201ENST00000554103 1267 ntBASIC20.97■□□□□ 0.95
SAA4P35542 AC016575.1-201ENST00000607026 382 ntBASIC20.97■□□□□ 0.95
SAA4P35542 DUX4L15-201ENST00000611059 1267 ntBASIC20.97■□□□□ 0.95
SAA4P35542 DUX4L23-201ENST00000615195 1269 ntBASIC20.97■□□□□ 0.95
SAA4P35542 DUX4L24-201ENST00000617576 1269 ntBASIC20.97■□□□□ 0.95
SAA4P35542 DUX4L22-201ENST00000618238 1269 ntBASIC20.97■□□□□ 0.95
SAA4P35542 DUX4L20-201ENST00000619712 1269 ntBASIC20.97■□□□□ 0.95
SAA4P35542 DUX4L21-201ENST00000622058 1269 ntBASIC20.97■□□□□ 0.95
SAA4P35542 DUX4L10-201ENST00000622460 1267 ntBASIC20.97■□□□□ 0.95
SAA4P35542 DUX4L25-201ENST00000624915 1269 ntBASIC20.97■□□□□ 0.95
SAA4P35542 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SAA4P35542 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
SAA4P35542 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SAA4P35542 NPC2-207ENST00000555619 1035 ntAPPRIS P2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SAA4P35542 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SAA4P35542 YAP1-204ENST00000526343 2393 ntTSL 5 BASIC20.95■□□□□ 0.94
SAA4P35542 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SAA4P35542 RPS2-202ENST00000526522 924 ntTSL 2 BASIC20.95■□□□□ 0.94
SAA4P35542 CHML-204ENST00000638121 920 ntTSL 2 BASIC20.95■□□□□ 0.94
SAA4P35542 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
SAA4P35542 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SAA4P35542 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SAA4P35542 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SAA4P35542 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SAA4P35542 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SAA4P35542 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
SAA4P35542 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SAA4P35542 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SAA4P35542 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SAA4P35542 AC135983.2-203ENST00000454486 1613 ntBASIC20.93■□□□□ 0.94
SAA4P35542 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SAA4P35542 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC20.92■□□□□ 0.94
SAA4P35542 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC20.92■□□□□ 0.94
SAA4P35542 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC20.92■□□□□ 0.94
SAA4P35542 ADAT3-201ENST00000329478 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SAA4P35542 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
SAA4P35542 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
SAA4P35542 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SAA4P35542 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
SAA4P35542 MIR639-201ENST00000384974 98 ntBASIC20.91■□□□□ 0.94
SAA4P35542 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
SAA4P35542 WHAMMP2-203ENST00000563942 1603 ntBASIC20.91■□□□□ 0.94
SAA4P35542 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
SAA4P35542 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
SAA4P35542 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
SAA4P35542 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC20.88■□□□□ 0.93
SAA4P35542 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
SAA4P35542 HES6-205ENST00000409356 528 ntTSL 2 BASIC20.88■□□□□ 0.93
SAA4P35542 FEZF2-202ENST00000475839 1918 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
SAA4P35542 ABCB10P1-201ENST00000614297 2181 ntBASIC20.87■□□□□ 0.93
SAA4P35542 ACOT7-201ENST00000361521 2429 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 35.9 ms