Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC31.77■■■□□ 2.68
SCN4AP35499 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC31.76■■■□□ 2.67
SCN4AP35499 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC31.75■■■□□ 2.67
SCN4AP35499 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC31.75■■■□□ 2.67
SCN4AP35499 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
SCN4AP35499 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC31.74■■■□□ 2.67
SCN4AP35499 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
SCN4AP35499 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC31.74■■■□□ 2.67
SCN4AP35499 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC31.73■■■□□ 2.67
SCN4AP35499 GFER-205ENST00000569451 517 ntTSL 5 BASIC31.73■■■□□ 2.67
SCN4AP35499 MAZ-208ENST00000563402 1461 ntTSL 5 BASIC31.73■■■□□ 2.67
SCN4AP35499 MAZ-210ENST00000566906 1455 ntTSL 5 BASIC31.73■■■□□ 2.67
SCN4AP35499 BOK-AS1-201ENST00000434306 643 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
SCN4AP35499 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC31.71■■■□□ 2.67
SCN4AP35499 GRASP-206ENST00000552049 1688 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
SCN4AP35499 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
SCN4AP35499 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
SCN4AP35499 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
SCN4AP35499 NOG-201ENST00000332822 1892 ntAPPRIS P1 BASIC31.7■■■□□ 2.67
SCN4AP35499 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
SCN4AP35499 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC31.7■■■□□ 2.66
SCN4AP35499 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC31.7■■■□□ 2.66
SCN4AP35499 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
SCN4AP35499 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
SCN4AP35499 HYI-213ENST00000583037 1322 ntTSL 5 BASIC31.65■■■□□ 2.66
SCN4AP35499 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC31.64■■■□□ 2.66
SCN4AP35499 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC31.64■■■□□ 2.66
SCN4AP35499 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
SCN4AP35499 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC31.62■■■□□ 2.65
SCN4AP35499 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC31.62■■■□□ 2.65
SCN4AP35499 PLEKHG6-206ENST00000536531 1683 ntTSL 1 (best) BASIC31.62■■■□□ 2.65
SCN4AP35499 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC31.61■■■□□ 2.65
SCN4AP35499 U85056.1-201ENST00000616429 682 ntBASIC31.61■■■□□ 2.65
SCN4AP35499 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC31.6■■■□□ 2.65
SCN4AP35499 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
SCN4AP35499 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC31.6■■■□□ 2.65
SCN4AP35499 LSM7-201ENST00000252622 529 ntAPPRIS P1 TSL 1 (best) BASIC31.59■■■□□ 2.65
SCN4AP35499 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC31.59■■■□□ 2.65
SCN4AP35499 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC31.58■■■□□ 2.65
SCN4AP35499 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC31.58■■■□□ 2.65
SCN4AP35499 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC31.58■■■□□ 2.65
SCN4AP35499 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC31.58■■■□□ 2.65
SCN4AP35499 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC31.58■■■□□ 2.65
SCN4AP35499 HNRNPAB-206ENST00000506339 1747 ntAPPRIS ALT2 TSL 5 BASIC31.57■■■□□ 2.64
SCN4AP35499 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC31.57■■■□□ 2.64
SCN4AP35499 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC31.57■■■□□ 2.64
SCN4AP35499 KRT18P60-201ENST00000312876 1297 ntBASIC31.56■■■□□ 2.64
SCN4AP35499 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC31.56■■■□□ 2.64
SCN4AP35499 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC31.55■■■□□ 2.64
SCN4AP35499 AC060814.1-201ENST00000554326 538 ntBASIC31.55■■■□□ 2.64
SCN4AP35499 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC31.55■■■□□ 2.64
SCN4AP35499 TSPY13P-201ENST00000338964 914 ntBASIC31.54■■■□□ 2.64
SCN4AP35499 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC31.54■■■□□ 2.64
SCN4AP35499 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC31.54■■■□□ 2.64
SCN4AP35499 TSPAN11-203ENST00000545802 1649 ntTSL 1 (best) BASIC31.54■■■□□ 2.64
SCN4AP35499 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC31.53■■■□□ 2.64
SCN4AP35499 RARRES2P1-201ENST00000474487 481 ntBASIC31.53■■■□□ 2.64
SCN4AP35499 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC31.52■■■□□ 2.64
SCN4AP35499 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC31.52■■■□□ 2.64
SCN4AP35499 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
SCN4AP35499 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC31.51■■■□□ 2.63
SCN4AP35499 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC31.51■■■□□ 2.63
SCN4AP35499 TMEM147-202ENST00000392204 935 ntTSL 2 BASIC31.5■■■□□ 2.63
SCN4AP35499 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC31.5■■■□□ 2.63
SCN4AP35499 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC31.5■■■□□ 2.63
SCN4AP35499 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
SCN4AP35499 DPP6-204ENST00000406326 2012 ntTSL 1 (best) BASIC31.5■■■□□ 2.63
SCN4AP35499 CTSZ-201ENST00000217131 1495 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
SCN4AP35499 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
SCN4AP35499 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC31.46■■■□□ 2.63
SCN4AP35499 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC31.46■■■□□ 2.63
SCN4AP35499 SDCCAG3-204ENST00000371725 2129 ntAPPRIS ALT2 TSL 5 BASIC31.45■■■□□ 2.63
SCN4AP35499 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
SCN4AP35499 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC31.44■■■□□ 2.62
SCN4AP35499 AC004987.1-201ENST00000428627 508 ntBASIC31.42■■■□□ 2.62
SCN4AP35499 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC31.42■■■□□ 2.62
SCN4AP35499 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC31.42■■■□□ 2.62
SCN4AP35499 AC148477.6-201ENST00000623746 465 ntBASIC31.42■■■□□ 2.62
SCN4AP35499 CCM2-201ENST00000258781 1894 ntAPPRIS P3 TSL 1 (best) BASIC31.42■■■□□ 2.62
SCN4AP35499 XKR6-201ENST00000297303 1550 ntTSL 1 (best) BASIC31.42■■■□□ 2.62
SCN4AP35499 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC31.4■■■□□ 2.62
SCN4AP35499 AC092296.2-201ENST00000589470 999 ntBASIC31.4■■■□□ 2.62
SCN4AP35499 HOXD-AS2-201ENST00000426965 927 ntTSL 1 (best) BASIC31.39■■■□□ 2.62
SCN4AP35499 CHST11-203ENST00000547956 936 ntTSL 2 BASIC31.38■■■□□ 2.61
SCN4AP35499 GLRB-203ENST00000509282 1757 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
SCN4AP35499 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC31.37■■■□□ 2.61
SCN4AP35499 ATP5G2P3-201ENST00000429083 425 ntBASIC31.37■■■□□ 2.61
SCN4AP35499 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC31.36■■■□□ 2.61
SCN4AP35499 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC31.36■■■□□ 2.61
SCN4AP35499 NOP53-201ENST00000246802 1528 ntAPPRIS P1 TSL 1 (best) BASIC31.36■■■□□ 2.61
SCN4AP35499 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC31.35■■■□□ 2.61
SCN4AP35499 PPP3CC-204ENST00000518852 1598 ntTSL 2 BASIC31.35■■■□□ 2.61
SCN4AP35499 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC31.35■■■□□ 2.61
SCN4AP35499 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
SCN4AP35499 SLC25A10-203ENST00000545862 1911 ntTSL 1 (best) BASIC31.34■■■□□ 2.61
SCN4AP35499 GUK1-208ENST00000366728 842 ntTSL 2 BASIC31.34■■■□□ 2.61
SCN4AP35499 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SCN4AP35499 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC31.34■■■□□ 2.61
SCN4AP35499 ZBTB12-201ENST00000375527 1875 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
SCN4AP35499 CCZ1-201ENST00000325974 1802 ntAPPRIS P1 TSL 1 (best) BASIC31.33■■■□□ 2.61
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms