Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DMBP28068 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DMBP28068 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
HLA-DMBP28068 TPGS1-201ENST00000359315 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DMBP28068 NMB-201ENST00000360476 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DMBP28068 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DMBP28068 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DMBP28068 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
HLA-DMBP28068 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.74
HLA-DMBP28068 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
HLA-DMBP28068 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
HLA-DMBP28068 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
HLA-DMBP28068 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
HLA-DMBP28068 CIB1-201ENST00000328649 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DMBP28068 CIB1-202ENST00000612800 1096 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
HLA-DMBP28068 TOMM40-201ENST00000252487 1707 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DMBP28068 TOMM40-202ENST00000405636 1709 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DMBP28068 NFYB-205ENST00000551727 1727 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
HLA-DMBP28068 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DMBP28068 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DMBP28068 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC19.62■□□□□ 0.73
HLA-DMBP28068 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC19.62■□□□□ 0.73
HLA-DMBP28068 NOXA1-201ENST00000341349 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
HLA-DMBP28068 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC19.61■□□□□ 0.73
HLA-DMBP28068 CHST14-202ENST00000559991 1968 ntTSL 5 BASIC19.61■□□□□ 0.73
HLA-DMBP28068 DENR-202ENST00000455982 1052 ntTSL 5 BASIC19.61■□□□□ 0.73
HLA-DMBP28068 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HLA-DMBP28068 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
HLA-DMBP28068 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC19.59■□□□□ 0.73
HLA-DMBP28068 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
HLA-DMBP28068 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
HLA-DMBP28068 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC19.59■□□□□ 0.73
HLA-DMBP28068 ENKD1-201ENST00000243878 1579 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HLA-DMBP28068 TNFSF12-201ENST00000293825 1553 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
HLA-DMBP28068 BATF3-201ENST00000243440 980 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
HLA-DMBP28068 AL139393.1-201ENST00000417479 573 ntTSL 5 BASIC19.58■□□□□ 0.72
HLA-DMBP28068 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
HLA-DMBP28068 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
HLA-DMBP28068 SERPING1-205ENST00000403558 2231 ntTSL 5 BASIC19.57■□□□□ 0.72
HLA-DMBP28068 ATP6V1E2-204ENST00000522587 1559 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
HLA-DMBP28068 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
HLA-DMBP28068 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC19.57■□□□□ 0.72
HLA-DMBP28068 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
HLA-DMBP28068 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HLA-DMBP28068 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HLA-DMBP28068 DNPEP-201ENST00000273075 2425 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
HLA-DMBP28068 CHPT1-201ENST00000229266 1585 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
HLA-DMBP28068 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
HLA-DMBP28068 HYAL2-202ENST00000395139 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HLA-DMBP28068 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HLA-DMBP28068 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC19.55■□□□□ 0.72
HLA-DMBP28068 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC19.55■□□□□ 0.72
HLA-DMBP28068 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
HLA-DMBP28068 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DMBP28068 HNRNPAB-204ENST00000504898 1785 ntAPPRIS P4 TSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DMBP28068 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
HLA-DMBP28068 MORF4L1-203ENST00000426013 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
HLA-DMBP28068 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
HLA-DMBP28068 AC127502.1-201ENST00000399971 1502 ntBASIC19.53■□□□□ 0.72
HLA-DMBP28068 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC19.53■□□□□ 0.72
HLA-DMBP28068 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
HLA-DMBP28068 SEC61G-204ENST00000450622 512 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
HLA-DMBP28068 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
HLA-DMBP28068 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DMBP28068 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
HLA-DMBP28068 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DMBP28068 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
HLA-DMBP28068 RPS2P35-201ENST00000443417 897 ntBASIC19.5■□□□□ 0.71
HLA-DMBP28068 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DMBP28068 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC19.5■□□□□ 0.71
HLA-DMBP28068 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HLA-DMBP28068 EBAG9-202ENST00000395785 1467 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HLA-DMBP28068 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
HLA-DMBP28068 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC19.48■□□□□ 0.71
HLA-DMBP28068 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
HLA-DMBP28068 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DMBP28068 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DMBP28068 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
HLA-DMBP28068 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
HLA-DMBP28068 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC19.47■□□□□ 0.71
HLA-DMBP28068 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC19.47■□□□□ 0.71
HLA-DMBP28068 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HLA-DMBP28068 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
HLA-DMBP28068 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC19.47■□□□□ 0.71
HLA-DMBP28068 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
HLA-DMBP28068 AC012629.2-201ENST00000606513 377 ntTSL 5 BASIC19.46■□□□□ 0.71
HLA-DMBP28068 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC19.46■□□□□ 0.71
HLA-DMBP28068 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
HLA-DMBP28068 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC19.45■□□□□ 0.7
HLA-DMBP28068 AP006261.1-201ENST00000584783 668 ntBASIC19.45■□□□□ 0.7
HLA-DMBP28068 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
HLA-DMBP28068 HNRNPLP2-201ENST00000568980 1570 ntBASIC19.44■□□□□ 0.7
HLA-DMBP28068 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-DMBP28068 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
HLA-DMBP28068 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-DMBP28068 H2AFV-205ENST00000381124 628 ntTSL 3 BASIC19.44■□□□□ 0.7
HLA-DMBP28068 MIR762-201ENST00000390236 83 ntBASIC19.44■□□□□ 0.7
HLA-DMBP28068 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC19.44■□□□□ 0.7
HLA-DMBP28068 RALY-201ENST00000246194 1789 ntAPPRIS P4 TSL 1 (best) BASIC19.44■□□□□ 0.7
HLA-DMBP28068 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms