Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
SMCHD1A6NHR9 RAB26-201ENST00000210187 1675 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
SMCHD1A6NHR9 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
SMCHD1A6NHR9 C14orf80-202ENST00000334656 1358 ntAPPRIS ALT2 TSL 2 BASIC30.07■■■□□ 2.4
SMCHD1A6NHR9 PGM5-201ENST00000396392 1782 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
SMCHD1A6NHR9 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
SMCHD1A6NHR9 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC30.07■■■□□ 2.4
SMCHD1A6NHR9 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC30.07■■■□□ 2.4
SMCHD1A6NHR9 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC30.06■■■□□ 2.4
SMCHD1A6NHR9 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC30.06■■■□□ 2.4
SMCHD1A6NHR9 BARX1-201ENST00000253968 1533 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SMCHD1A6NHR9 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC30.05■■■□□ 2.4
SMCHD1A6NHR9 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC30.05■■■□□ 2.4
SMCHD1A6NHR9 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC30.04■■■□□ 2.4
SMCHD1A6NHR9 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC30.03■■■□□ 2.4
SMCHD1A6NHR9 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC30.03■■■□□ 2.4
SMCHD1A6NHR9 COQ2-202ENST00000311469 1641 ntAPPRIS P2 TSL 1 (best) BASIC30.02■■■□□ 2.4
SMCHD1A6NHR9 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC30.02■■■□□ 2.4
SMCHD1A6NHR9 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC30.01■■■□□ 2.4
SMCHD1A6NHR9 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.4
SMCHD1A6NHR9 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
SMCHD1A6NHR9 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC30.01■■■□□ 2.39
SMCHD1A6NHR9 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC30.01■■■□□ 2.39
SMCHD1A6NHR9 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC30■■■□□ 2.39
SMCHD1A6NHR9 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
SMCHD1A6NHR9 DUX4L13-201ENST00000554103 1267 ntBASIC29.99■■■□□ 2.39
SMCHD1A6NHR9 DUX4L15-201ENST00000611059 1267 ntBASIC29.99■■■□□ 2.39
SMCHD1A6NHR9 DUX4L23-201ENST00000615195 1269 ntBASIC29.99■■■□□ 2.39
SMCHD1A6NHR9 DUX4L24-201ENST00000617576 1269 ntBASIC29.99■■■□□ 2.39
SMCHD1A6NHR9 DUX4L22-201ENST00000618238 1269 ntBASIC29.99■■■□□ 2.39
SMCHD1A6NHR9 DUX4L20-201ENST00000619712 1269 ntBASIC29.99■■■□□ 2.39
SMCHD1A6NHR9 DUX4L21-201ENST00000622058 1269 ntBASIC29.99■■■□□ 2.39
SMCHD1A6NHR9 DUX4L10-201ENST00000622460 1267 ntBASIC29.99■■■□□ 2.39
SMCHD1A6NHR9 DUX4L25-201ENST00000624915 1269 ntBASIC29.99■■■□□ 2.39
SMCHD1A6NHR9 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC29.99■■■□□ 2.39
SMCHD1A6NHR9 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC29.98■■■□□ 2.39
SMCHD1A6NHR9 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC29.98■■■□□ 2.39
SMCHD1A6NHR9 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC29.98■■■□□ 2.39
SMCHD1A6NHR9 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
SMCHD1A6NHR9 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC29.97■■■□□ 2.39
SMCHD1A6NHR9 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC29.97■■■□□ 2.39
SMCHD1A6NHR9 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC29.97■■■□□ 2.39
SMCHD1A6NHR9 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC29.97■■■□□ 2.39
SMCHD1A6NHR9 BRD4-212ENST00000630599 726 ntTSL 2 BASIC29.96■■■□□ 2.39
SMCHD1A6NHR9 GRK6-206ENST00000507633 1660 ntTSL 5 BASIC29.95■■■□□ 2.39
SMCHD1A6NHR9 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC29.95■■■□□ 2.39
SMCHD1A6NHR9 FSD1L-204ENST00000469022 1836 ntTSL 1 (best) BASIC29.95■■■□□ 2.39
SMCHD1A6NHR9 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC29.94■■■□□ 2.38
SMCHD1A6NHR9 CFAP73-201ENST00000335621 1514 ntAPPRIS P1 TSL 5 BASIC29.94■■■□□ 2.38
SMCHD1A6NHR9 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC29.93■■■□□ 2.38
SMCHD1A6NHR9 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC29.93■■■□□ 2.38
SMCHD1A6NHR9 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC29.93■■■□□ 2.38
SMCHD1A6NHR9 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
SMCHD1A6NHR9 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC29.92■■■□□ 2.38
SMCHD1A6NHR9 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC29.92■■■□□ 2.38
SMCHD1A6NHR9 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC29.92■■■□□ 2.38
SMCHD1A6NHR9 IFNGR2-201ENST00000290219 2221 ntAPPRIS P3 TSL 1 (best) BASIC29.91■■■□□ 2.38
SMCHD1A6NHR9 AC135983.2-203ENST00000454486 1613 ntBASIC29.91■■■□□ 2.38
SMCHD1A6NHR9 METRNL-202ENST00000570778 967 ntTSL 5 BASIC29.91■■■□□ 2.38
SMCHD1A6NHR9 GNAI2-202ENST00000313601 2464 ntAPPRIS P1 TSL 1 (best) BASIC29.91■■■□□ 2.38
SMCHD1A6NHR9 CHML-204ENST00000638121 920 ntTSL 2 BASIC29.9■■■□□ 2.38
SMCHD1A6NHR9 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC29.89■■■□□ 2.38
SMCHD1A6NHR9 ABHD17AP3-201ENST00000503096 1137 ntBASIC29.88■■■□□ 2.37
SMCHD1A6NHR9 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC29.88■■■□□ 2.37
SMCHD1A6NHR9 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC29.88■■■□□ 2.37
SMCHD1A6NHR9 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC29.87■■■□□ 2.37
SMCHD1A6NHR9 WHAMMP2-203ENST00000563942 1603 ntBASIC29.87■■■□□ 2.37
SMCHD1A6NHR9 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC29.87■■■□□ 2.37
SMCHD1A6NHR9 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
SMCHD1A6NHR9 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC29.86■■■□□ 2.37
SMCHD1A6NHR9 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC29.86■■■□□ 2.37
SMCHD1A6NHR9 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC29.86■■■□□ 2.37
SMCHD1A6NHR9 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC29.85■■■□□ 2.37
SMCHD1A6NHR9 AC016595.1-201ENST00000559410 383 ntTSL 3 BASIC29.85■■■□□ 2.37
SMCHD1A6NHR9 LINC02323-201ENST00000559946 1603 ntTSL 3 BASIC29.85■■■□□ 2.37
SMCHD1A6NHR9 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC29.85■■■□□ 2.37
SMCHD1A6NHR9 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC29.84■■■□□ 2.37
SMCHD1A6NHR9 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC29.84■■■□□ 2.37
SMCHD1A6NHR9 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC29.84■■■□□ 2.37
SMCHD1A6NHR9 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC29.83■■■□□ 2.37
SMCHD1A6NHR9 AC127502.1-201ENST00000399971 1502 ntBASIC29.83■■■□□ 2.37
SMCHD1A6NHR9 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC29.83■■■□□ 2.37
SMCHD1A6NHR9 HSD11B1L-202ENST00000339423 1660 ntAPPRIS P3 TSL 1 (best) BASIC29.83■■■□□ 2.37
SMCHD1A6NHR9 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC29.83■■■□□ 2.37
SMCHD1A6NHR9 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC29.82■■■□□ 2.36
SMCHD1A6NHR9 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC29.82■■■□□ 2.36
SMCHD1A6NHR9 AC018755.3-201ENST00000598755 664 ntTSL 2 BASIC29.8■■■□□ 2.36
SMCHD1A6NHR9 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC29.8■■■□□ 2.36
SMCHD1A6NHR9 ST7-AS1-201ENST00000456775 1889 ntBASIC29.79■■■□□ 2.36
SMCHD1A6NHR9 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC29.79■■■□□ 2.36
SMCHD1A6NHR9 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC29.79■■■□□ 2.36
SMCHD1A6NHR9 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC29.79■■■□□ 2.36
SMCHD1A6NHR9 TXNRD2-204ENST00000400521 2115 ntAPPRIS P2 TSL 1 (best) BASIC29.78■■■□□ 2.36
SMCHD1A6NHR9 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
SMCHD1A6NHR9 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC29.78■■■□□ 2.36
SMCHD1A6NHR9 HES6-205ENST00000409356 528 ntTSL 2 BASIC29.77■■■□□ 2.36
SMCHD1A6NHR9 CHST11-202ENST00000546689 756 ntTSL 2 BASIC29.77■■■□□ 2.36
SMCHD1A6NHR9 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC29.76■■■□□ 2.35
SMCHD1A6NHR9 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC29.76■■■□□ 2.35
SMCHD1A6NHR9 SRP68-213ENST00000629930 165 ntTSL 5 BASIC29.76■■■□□ 2.35
Retrieved 100 of 98,524 protein–RNA pairs in 232.5 ms