Protein–RNA interactions for Protein: A0A0B4J1K2

Trav9-4, T cell receptor alpha variable 9-4 (Fragment), mousemouse

Predictions only

Length 113 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav9-4A0A0B4J1K2 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC17.95■□□□□ 0.46
Trav9-4A0A0B4J1K2 Cops6-202ENSMUST00000110951 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Trav9-4A0A0B4J1K2 Evx2-202ENSMUST00000173623 1428 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav9-4A0A0B4J1K2 Endog-201ENSMUST00000015481 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Trav9-4A0A0B4J1K2 2410017I17Rik-202ENSMUST00000090537 2053 ntTSL 2 BASIC17.93■□□□□ 0.46
Trav9-4A0A0B4J1K2 Eif5a-201ENSMUST00000043419 1437 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav9-4A0A0B4J1K2 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trav9-4A0A0B4J1K2 Gm9939-201ENSMUST00000067161 1154 ntBASIC17.91■□□□□ 0.46
Trav9-4A0A0B4J1K2 Uba52-207ENSMUST00000140679 697 ntAPPRIS P1 TSL 2 BASIC17.9■□□□□ 0.46
Trav9-4A0A0B4J1K2 Arhgap22-201ENSMUST00000111955 2148 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trav9-4A0A0B4J1K2 Babam2-209ENSMUST00000201352 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trav9-4A0A0B4J1K2 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trav9-4A0A0B4J1K2 Plekha3-201ENSMUST00000111920 2534 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trav9-4A0A0B4J1K2 Fezf2-202ENSMUST00000224023 1917 ntBASIC17.88■□□□□ 0.45
Trav9-4A0A0B4J1K2 Bod1-202ENSMUST00000109415 799 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
Trav9-4A0A0B4J1K2 Ccdc50-202ENSMUST00000096127 1096 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Trav9-4A0A0B4J1K2 E2f5-201ENSMUST00000029069 1779 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trav9-4A0A0B4J1K2 Serpinb6a-201ENSMUST00000017188 1504 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Trav9-4A0A0B4J1K2 Pcgf5-210ENSMUST00000225411 1626 ntAPPRIS P5 BASIC17.87■□□□□ 0.45
Trav9-4A0A0B4J1K2 Lmo4-201ENSMUST00000120539 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trav9-4A0A0B4J1K2 Gm31266-201ENSMUST00000192060 656 ntTSL 5 BASIC17.87■□□□□ 0.45
Trav9-4A0A0B4J1K2 Rundc3a-203ENSMUST00000107103 1822 ntTSL 5 BASIC17.86■□□□□ 0.45
Trav9-4A0A0B4J1K2 Zbtb12-201ENSMUST00000052778 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav9-4A0A0B4J1K2 Basp1-201ENSMUST00000058845 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trav9-4A0A0B4J1K2 Nkain2-201ENSMUST00000092602 558 ntBASIC17.86■□□□□ 0.45
Trav9-4A0A0B4J1K2 Aspscr1-202ENSMUST00000103016 1689 ntTSL 5 BASIC17.85■□□□□ 0.45
Trav9-4A0A0B4J1K2 Gm6821-201ENSMUST00000107540 542 ntBASIC17.85■□□□□ 0.45
Trav9-4A0A0B4J1K2 Nucks1-203ENSMUST00000189946 2375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav9-4A0A0B4J1K2 Rtn2-201ENSMUST00000032559 1990 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav9-4A0A0B4J1K2 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav9-4A0A0B4J1K2 Gm30023-201ENSMUST00000197970 889 ntBASIC17.84■□□□□ 0.45
Trav9-4A0A0B4J1K2 Gm42809-201ENSMUST00000198429 1138 ntBASIC17.84■□□□□ 0.45
Trav9-4A0A0B4J1K2 AC117232.3-201ENSMUST00000217817 338 ntTSL 2 BASIC17.84■□□□□ 0.45
Trav9-4A0A0B4J1K2 Cib1-201ENSMUST00000065163 1047 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav9-4A0A0B4J1K2 Rgs7-206ENSMUST00000194555 2431 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav9-4A0A0B4J1K2 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC17.84■□□□□ 0.45
Trav9-4A0A0B4J1K2 Ubp1-203ENSMUST00000116492 2111 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav9-4A0A0B4J1K2 Cbln1-201ENSMUST00000034076 2800 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trav9-4A0A0B4J1K2 Mef2a-201ENSMUST00000032776 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trav9-4A0A0B4J1K2 Rcor2-201ENSMUST00000066646 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trav9-4A0A0B4J1K2 Sh3rf1-201ENSMUST00000034060 5479 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trav9-4A0A0B4J1K2 1810049J17Rik-201ENSMUST00000180521 462 ntAPPRIS P1 BASIC17.83■□□□□ 0.44
Trav9-4A0A0B4J1K2 Dnajb2-202ENSMUST00000082158 1253 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Trav9-4A0A0B4J1K2 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trav9-4A0A0B4J1K2 Gm20402-201ENSMUST00000174738 687 ntTSL 3 BASIC17.82■□□□□ 0.44
Trav9-4A0A0B4J1K2 Lmo2-203ENSMUST00000111143 1654 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trav9-4A0A0B4J1K2 Wdr34-201ENSMUST00000113711 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trav9-4A0A0B4J1K2 Hmx3-201ENSMUST00000046093 1457 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trav9-4A0A0B4J1K2 Nelfe-201ENSMUST00000097343 1607 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
Trav9-4A0A0B4J1K2 Ankrd60-202ENSMUST00000119453 1084 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
Trav9-4A0A0B4J1K2 Neurog2-201ENSMUST00000029587 2227 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav9-4A0A0B4J1K2 Ccnd3-205ENSMUST00000182209 1977 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trav9-4A0A0B4J1K2 AC163623.1-201ENSMUST00000213738 727 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
Trav9-4A0A0B4J1K2 Bcl7b-201ENSMUST00000031692 1758 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trav9-4A0A0B4J1K2 Cys1-203ENSMUST00000156453 1732 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Trav9-4A0A0B4J1K2 Arf6-201ENSMUST00000050063 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav9-4A0A0B4J1K2 AY074887-201ENSMUST00000054018 769 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Trav9-4A0A0B4J1K2 Tceal5-201ENSMUST00000066819 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav9-4A0A0B4J1K2 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trav9-4A0A0B4J1K2 B230208H11Rik-201ENSMUST00000180529 1112 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trav9-4A0A0B4J1K2 Ube2i-206ENSMUST00000172618 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trav9-4A0A0B4J1K2 Wt1-209ENSMUST00000213301 1554 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trav9-4A0A0B4J1K2 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav9-4A0A0B4J1K2 Lemd2-201ENSMUST00000055117 2595 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trav9-4A0A0B4J1K2 Rab40c-209ENSMUST00000179998 2456 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Trav9-4A0A0B4J1K2 Rbmxl2-201ENSMUST00000098135 1472 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Trav9-4A0A0B4J1K2 Ppp1r3e-201ENSMUST00000168622 1852 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Trav9-4A0A0B4J1K2 Cdkn2b-201ENSMUST00000097981 1393 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trav9-4A0A0B4J1K2 Pm20d2-202ENSMUST00000119167 1339 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trav9-4A0A0B4J1K2 Bcl7c-207ENSMUST00000207019 654 ntTSL 3 BASIC17.74■□□□□ 0.43
Trav9-4A0A0B4J1K2 Ccdc122-201ENSMUST00000048208 1721 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav9-4A0A0B4J1K2 Mospd3-201ENSMUST00000037620 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trav9-4A0A0B4J1K2 Mapkap1-201ENSMUST00000113123 1530 ntTSL 5 BASIC17.73■□□□□ 0.43
Trav9-4A0A0B4J1K2 Marveld2-202ENSMUST00000163163 2187 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trav9-4A0A0B4J1K2 Gskip-202ENSMUST00000222284 1064 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trav9-4A0A0B4J1K2 Shf-203ENSMUST00000110531 1557 ntAPPRIS P2 TSL 5 BASIC17.73■□□□□ 0.43
Trav9-4A0A0B4J1K2 Tdp2-201ENSMUST00000038039 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trav9-4A0A0B4J1K2 D730045B01Rik-202ENSMUST00000186838 1543 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trav9-4A0A0B4J1K2 Iscu-203ENSMUST00000112312 1116 ntTSL 5 BASIC17.72■□□□□ 0.43
Trav9-4A0A0B4J1K2 Gm8503-201ENSMUST00000118131 455 ntBASIC17.72■□□□□ 0.43
Trav9-4A0A0B4J1K2 E130102H24Rik-201ENSMUST00000144604 741 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
Trav9-4A0A0B4J1K2 Glrx2-205ENSMUST00000145571 758 ntTSL 2 BASIC17.72■□□□□ 0.43
Trav9-4A0A0B4J1K2 Acot5-201ENSMUST00000046422 1518 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Trav9-4A0A0B4J1K2 En1-201ENSMUST00000079721 2624 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav9-4A0A0B4J1K2 Pate2-201ENSMUST00000098906 1690 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
Trav9-4A0A0B4J1K2 Gm11529-201ENSMUST00000153012 639 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trav9-4A0A0B4J1K2 Htra4-201ENSMUST00000084031 2180 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav9-4A0A0B4J1K2 Mta3-201ENSMUST00000067826 2087 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav9-4A0A0B4J1K2 Zdhhc2-202ENSMUST00000128166 1547 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav9-4A0A0B4J1K2 Ybx3-201ENSMUST00000032309 1853 ntAPPRIS P4 TSL 1 (best) BASIC17.71■□□□□ 0.43
Trav9-4A0A0B4J1K2 6430548M08Rik-202ENSMUST00000108948 1762 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
Trav9-4A0A0B4J1K2 2310014F06Rik-201ENSMUST00000146145 1567 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
Trav9-4A0A0B4J1K2 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Trav9-4A0A0B4J1K2 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Trav9-4A0A0B4J1K2 Gm28052-201ENSMUST00000150388 380 ntTSL 3 BASIC17.69■□□□□ 0.42
Trav9-4A0A0B4J1K2 4930542C12Rik-201ENSMUST00000171096 1203 ntBASIC17.69■□□□□ 0.42
Trav9-4A0A0B4J1K2 Fank1-204ENSMUST00000209511 1392 ntTSL 5 BASIC17.68■□□□□ 0.42
Trav9-4A0A0B4J1K2 St7-208ENSMUST00000115419 2194 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trav9-4A0A0B4J1K2 Smarcad1-211ENSMUST00000204696 734 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Trav9-4A0A0B4J1K2 Snx3-203ENSMUST00000105500 753 ntTSL 5 BASIC17.67■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 20.6 ms