Protein–RNA interactions for Protein: A0A0B4J1J9

Trav11, T cell receptor alpha variable 11 (Fragment), mousemouse

Predictions only

Length 114 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav11A0A0B4J1J9 Gm26115-201ENSMUST00000175605 87 ntBASIC16.29■□□□□ 0.2
Trav11A0A0B4J1J9 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav11A0A0B4J1J9 Zcchc14-201ENSMUST00000046386 7444 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Trav11A0A0B4J1J9 Hexdc-201ENSMUST00000038831 2378 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Trav11A0A0B4J1J9 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trav11A0A0B4J1J9 Gm8109-201ENSMUST00000194076 746 ntBASIC16.28■□□□□ 0.2
Trav11A0A0B4J1J9 Fam220a-204ENSMUST00000119488 2202 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trav11A0A0B4J1J9 Fam220a-209ENSMUST00000200267 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
Trav11A0A0B4J1J9 Preb-209ENSMUST00000202567 1869 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
Trav11A0A0B4J1J9 Gxylt1-202ENSMUST00000057896 1891 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
Trav11A0A0B4J1J9 Cgref1-201ENSMUST00000031051 1442 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav11A0A0B4J1J9 Kras-201ENSMUST00000032399 4678 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
Trav11A0A0B4J1J9 Kcnc3-201ENSMUST00000107906 5062 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav11A0A0B4J1J9 A530058N18Rik-201ENSMUST00000128469 646 ntTSL 2 BASIC16.26■□□□□ 0.19
Trav11A0A0B4J1J9 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav11A0A0B4J1J9 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
Trav11A0A0B4J1J9 Ssbp4-205ENSMUST00000210369 1828 ntTSL 2 BASIC16.26■□□□□ 0.19
Trav11A0A0B4J1J9 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Trav11A0A0B4J1J9 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav11A0A0B4J1J9 Ablim1-208ENSMUST00000111544 2231 ntTSL 5 BASIC16.25■□□□□ 0.19
Trav11A0A0B4J1J9 Pura-201ENSMUST00000051301 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav11A0A0B4J1J9 Taf4-201ENSMUST00000041618 4416 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
Trav11A0A0B4J1J9 Crem-227ENSMUST00000149803 1422 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trav11A0A0B4J1J9 Sowahd-201ENSMUST00000060057 1574 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
Trav11A0A0B4J1J9 Kcmf1-204ENSMUST00000204598 1743 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trav11A0A0B4J1J9 Pcf11-205ENSMUST00000208255 1720 ntBASIC16.24■□□□□ 0.19
Trav11A0A0B4J1J9 Pou6f1-202ENSMUST00000073837 4953 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
Trav11A0A0B4J1J9 Gm15688-201ENSMUST00000161394 2418 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
Trav11A0A0B4J1J9 Ctdspl-201ENSMUST00000073109 4589 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav11A0A0B4J1J9 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
Trav11A0A0B4J1J9 Msto1-202ENSMUST00000126245 1875 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav11A0A0B4J1J9 Kcnc3-206ENSMUST00000208651 2728 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
Trav11A0A0B4J1J9 Cacfd1-204ENSMUST00000114006 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
Trav11A0A0B4J1J9 Stard10-202ENSMUST00000163799 1723 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
Trav11A0A0B4J1J9 Nisch-222ENSMUST00000172142 2780 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav11A0A0B4J1J9 Kmt5a-202ENSMUST00000100709 1425 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
Trav11A0A0B4J1J9 Mapk1-203ENSMUST00000115731 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav11A0A0B4J1J9 Pcsk1n-201ENSMUST00000041096 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav11A0A0B4J1J9 Tsg101-201ENSMUST00000014546 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
Trav11A0A0B4J1J9 Egr3-201ENSMUST00000035908 1509 ntAPPRIS ALT1 TSL 1 (best) BASIC16.2■□□□□ 0.18
Trav11A0A0B4J1J9 Efcc1-202ENSMUST00000159570 2293 ntAPPRIS P2 TSL 5 BASIC16.2■□□□□ 0.18
Trav11A0A0B4J1J9 Rnd2-201ENSMUST00000001347 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav11A0A0B4J1J9 Znrf3-202ENSMUST00000143746 1022 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
Trav11A0A0B4J1J9 Macrod1-201ENSMUST00000040261 1274 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav11A0A0B4J1J9 Hnrnpl-201ENSMUST00000038572 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav11A0A0B4J1J9 Hsd17b11-201ENSMUST00000031251 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav11A0A0B4J1J9 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
Trav11A0A0B4J1J9 Exosc6-201ENSMUST00000210390 1326 ntAPPRIS P1 BASIC16.19■□□□□ 0.18
Trav11A0A0B4J1J9 Gtpbp2-201ENSMUST00000024748 2966 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav11A0A0B4J1J9 Cds2-203ENSMUST00000110158 1247 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
Trav11A0A0B4J1J9 Snx3-201ENSMUST00000019939 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Trav11A0A0B4J1J9 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC16.16■□□□□ 0.18
Trav11A0A0B4J1J9 Klhl2-205ENSMUST00000210166 5126 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav11A0A0B4J1J9 Ildr2-206ENSMUST00000194964 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav11A0A0B4J1J9 Thra-202ENSMUST00000103139 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Trav11A0A0B4J1J9 Slc1a5-201ENSMUST00000108496 2764 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Trav11A0A0B4J1J9 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trav11A0A0B4J1J9 Srcap-211ENSMUST00000189136 1960 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Trav11A0A0B4J1J9 Ints11-202ENSMUST00000120794 1884 ntTSL 5 BASIC16.15■□□□□ 0.18
Trav11A0A0B4J1J9 Coq10a-207ENSMUST00000220227 1434 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Trav11A0A0B4J1J9 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC16.14■□□□□ 0.17
Trav11A0A0B4J1J9 Yrdc-201ENSMUST00000102628 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Trav11A0A0B4J1J9 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trav11A0A0B4J1J9 Jmy-202ENSMUST00000220513 1843 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Trav11A0A0B4J1J9 Cdkn2c-202ENSMUST00000097921 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav11A0A0B4J1J9 Usp12-201ENSMUST00000085614 4327 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav11A0A0B4J1J9 Cd320-201ENSMUST00000002379 2209 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
Trav11A0A0B4J1J9 Slc22a17-201ENSMUST00000050772 2290 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav11A0A0B4J1J9 P3h4-201ENSMUST00000066489 2178 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav11A0A0B4J1J9 2510039O18Rik-201ENSMUST00000103232 2731 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav11A0A0B4J1J9 Tead1-203ENSMUST00000084705 2543 ntAPPRIS ALT1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav11A0A0B4J1J9 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Trav11A0A0B4J1J9 Fam174a-201ENSMUST00000059975 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
Trav11A0A0B4J1J9 Cited2-201ENSMUST00000038107 1979 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav11A0A0B4J1J9 Macrod2-205ENSMUST00000110063 845 ntTSL 5 BASIC16.11■□□□□ 0.17
Trav11A0A0B4J1J9 Ndufaf6-201ENSMUST00000058183 1082 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav11A0A0B4J1J9 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Trav11A0A0B4J1J9 Emid1-201ENSMUST00000062821 1947 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav11A0A0B4J1J9 A530058N18Rik-207ENSMUST00000152254 1211 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Trav11A0A0B4J1J9 Mypop-201ENSMUST00000059331 2173 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Trav11A0A0B4J1J9 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Trav11A0A0B4J1J9 Foxn3-209ENSMUST00000177451 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav11A0A0B4J1J9 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC16.09■□□□□ 0.17
Trav11A0A0B4J1J9 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav11A0A0B4J1J9 AC122428.3-201ENSMUST00000215551 2290 ntBASIC16.09■□□□□ 0.17
Trav11A0A0B4J1J9 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
Trav11A0A0B4J1J9 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trav11A0A0B4J1J9 Sh3glb2-203ENSMUST00000113620 1694 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trav11A0A0B4J1J9 Dennd5a-201ENSMUST00000080437 5004 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav11A0A0B4J1J9 Vstm2l-201ENSMUST00000109523 1363 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Trav11A0A0B4J1J9 Zcchc2-202ENSMUST00000119166 6368 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav11A0A0B4J1J9 Fam220a-201ENSMUST00000067145 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav11A0A0B4J1J9 Syndig1l-201ENSMUST00000095550 2524 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav11A0A0B4J1J9 B3gat1-201ENSMUST00000115269 1665 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trav11A0A0B4J1J9 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
Trav11A0A0B4J1J9 Ubtf-210ENSMUST00000174302 4692 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
Trav11A0A0B4J1J9 Itpka-201ENSMUST00000028758 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav11A0A0B4J1J9 Gm527-201ENSMUST00000058135 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav11A0A0B4J1J9 St3gal2-202ENSMUST00000117534 2177 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Trav11A0A0B4J1J9 Mtch1-202ENSMUST00000118366 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 255.1 ms