Protein–RNA interactions for Protein: Q9R1R2

Trim3, Tripartite motif-containing protein 3, mousemouse

Predictions only

Length 744 aa.

Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim3Q9R1R2 Gm21209-202ENSMUST00000189354 922 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm20937-203ENSMUST00000189422 923 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm20890-201ENSMUST00000189518 923 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm21477-202ENSMUST00000189543 924 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm8403-201ENSMUST00000189712 1298 ntBASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm29110-201ENSMUST00000189924 922 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm20814-201ENSMUST00000190173 922 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm29573-201ENSMUST00000190291 919 ntBASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Sly-202ENSMUST00000190292 922 ntAPPRIS P2 TSL 1 (best) BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm21650-202ENSMUST00000190551 923 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm20905-201ENSMUST00000190782 923 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm20817-201ENSMUST00000191123 923 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm20843-202ENSMUST00000191305 925 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm21258-202ENSMUST00000191553 923 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm29866-201ENSMUST00000191675 923 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm31571-201ENSMUST00000192521 922 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm37947-201ENSMUST00000192740 894 ntTSL 5 BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm21366-201ENSMUST00000192892 923 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm37417-201ENSMUST00000195257 454 ntBASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm37817-201ENSMUST00000195276 434 ntBASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm34732-201ENSMUST00000195441 445 ntTSL 3 BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm45316-201ENSMUST00000210128 162 ntBASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm45420-201ENSMUST00000211243 425 ntBASIC3.15□□□□□ -1.91
Trim3Q9R1R2 AC113305.1-201ENSMUST00000214664 724 ntBASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm39380-201ENSMUST00000214710 192 ntTSL 5 BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Mbd3l1-203ENSMUST00000215255 708 ntAPPRIS P1 TSL 3 BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Prl7d1-201ENSMUST00000021776 993 ntAPPRIS ALT2 TSL 1 (best) BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm35405-201ENSMUST00000218754 400 ntBASIC3.15□□□□□ -1.91
Trim3Q9R1R2 AC153977.1-201ENSMUST00000219416 506 ntTSL 5 BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm35558-202ENSMUST00000221819 499 ntBASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm33424-201ENSMUST00000222317 257 ntTSL 5 BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 1700024I08Rik-203ENSMUST00000222372 754 ntTSL 1 (best) BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 CT025157.1-201ENSMUST00000226241 292 ntBASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Spag11b-201ENSMUST00000039075 342 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Olfr173-201ENSMUST00000049940 1164 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Olfr853-201ENSMUST00000058296 918 ntAPPRIS P1 BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Snord35b-201ENSMUST00000082833 87 ntBASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm44150-201ENSMUST00000203317 2619 ntBASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Olfr1467-202ENSMUST00000215096 3671 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Gm9496-201ENSMUST00000191295 1601 ntBASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Olfr1211-203ENSMUST00000213412 4173 ntAPPRIS P1 TSL 5 BASIC3.15□□□□□ -1.91
Trim3Q9R1R2 Olfr1033-205ENSMUST00000218397 3973 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
Trim3Q9R1R2 AC161254.1-201ENSMUST00000220310 3842 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Slco6c1-202ENSMUST00000189547 2315 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Ifi208-201ENSMUST00000085876 2990 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Gm38699-201ENSMUST00000221301 1740 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Iglv3-201ENSMUST00000103751 381 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Gm23530-201ENSMUST00000104564 137 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Gm24403-201ENSMUST00000104616 130 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Gm14125-201ENSMUST00000113442 680 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Mir1193-201ENSMUST00000116761 121 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Gm13167-201ENSMUST00000118554 578 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Gm12137-201ENSMUST00000119565 346 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Defa-ps5-201ENSMUST00000121541 279 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Cyp3a25-202ENSMUST00000138870 513 ntTSL 3 BASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Gm9785-202ENSMUST00000144563 593 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Gm11998-201ENSMUST00000146304 972 ntTSL 1 (best) BASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Gm23326-201ENSMUST00000157419 105 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Gm23671-201ENSMUST00000157472 103 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Gm24314-201ENSMUST00000158274 123 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Gm17916-203ENSMUST00000189918 324 ntTSL 5 BASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Gm43489-201ENSMUST00000196810 993 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Gm42476-201ENSMUST00000198860 554 ntTSL 3 BASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Gm44988-201ENSMUST00000203835 1161 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Gm19177-201ENSMUST00000204520 613 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Klra13-ps-204ENSMUST00000205252 640 ntTSL 3 BASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Gm44824-201ENSMUST00000207021 229 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Olfr188-ps1-202ENSMUST00000220235 925 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 AC126275.2-201ENSMUST00000225224 253 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Samt4-201ENSMUST00000026029 963 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Klra7-201ENSMUST00000032286 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Defb14-201ENSMUST00000052601 204 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Olfr1489-201ENSMUST00000053113 1111 ntAPPRIS P1 BASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Rpl26-ps2-201ENSMUST00000085379 435 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Olfr1043-203ENSMUST00000213949 1778 ntAPPRIS P1 TSL 5 BASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Fbxw16-201ENSMUST00000084984 1497 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Mgat4c-202ENSMUST00000120748 2603 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Zfp930-201ENSMUST00000110216 1323 ntTSL 5 BASIC3.14□□□□□ -1.91
Trim3Q9R1R2 AC154634.4-201ENSMUST00000226077 2665 ntBASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Acsm3-201ENSMUST00000063770 2651 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Gm3259-201ENSMUST00000101015 2504 ntAPPRIS P2 TSL 1 (best) BASIC3.14□□□□□ -1.91
Trim3Q9R1R2 Vmn2r106-201ENSMUST00000167464 2589 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
Trim3Q9R1R2 Gm42483-201ENSMUST00000197556 1742 ntBASIC3.13□□□□□ -1.91
Trim3Q9R1R2 Zfp934-202ENSMUST00000101547 2147 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
Trim3Q9R1R2 Olfr1325-202ENSMUST00000216007 3617 ntAPPRIS ALT2 TSL 5 BASIC3.13□□□□□ -1.91
Trim3Q9R1R2 Olfr351-201ENSMUST00000100150 933 ntAPPRIS P1 BASIC3.13□□□□□ -1.91
Trim3Q9R1R2 Wfdc18-201ENSMUST00000001009 521 ntAPPRIS P1 TSL 1 (best) BASIC3.13□□□□□ -1.91
Trim3Q9R1R2 Gm24671-201ENSMUST00000104159 158 ntBASIC3.13□□□□□ -1.91
Trim3Q9R1R2 Gm22590-201ENSMUST00000104247 128 ntBASIC3.13□□□□□ -1.91
Trim3Q9R1R2 Gm12025-201ENSMUST00000117768 144 ntBASIC3.13□□□□□ -1.91
Trim3Q9R1R2 Gm14238-201ENSMUST00000120227 323 ntBASIC3.13□□□□□ -1.91
Trim3Q9R1R2 Gm16445-201ENSMUST00000120399 714 ntBASIC3.13□□□□□ -1.91
Trim3Q9R1R2 Gm14713-201ENSMUST00000122362 686 ntBASIC3.13□□□□□ -1.91
Trim3Q9R1R2 Gm25557-201ENSMUST00000158084 315 ntBASIC3.13□□□□□ -1.91
Trim3Q9R1R2 Klrc1-204ENSMUST00000169545 676 ntAPPRIS ALT2 TSL 1 (best) BASIC3.13□□□□□ -1.91
Trim3Q9R1R2 Gm25026-201ENSMUST00000175017 188 ntBASIC3.13□□□□□ -1.91
Trim3Q9R1R2 Gm25748-201ENSMUST00000175487 70 ntBASIC3.13□□□□□ -1.91
Trim3Q9R1R2 Gm18486-201ENSMUST00000184040 298 ntBASIC3.13□□□□□ -1.91
Trim3Q9R1R2 Mir7658-201ENSMUST00000184043 57 ntBASIC3.13□□□□□ -1.91
Trim3Q9R1R2 Ms4a4a-201ENSMUST00000188995 836 ntAPPRIS P1 TSL 5 BASIC3.13□□□□□ -1.91
Retrieved 100 of 76,532 protein–RNA pairs in 149.2 ms