Protein–RNA interactions for Protein: P38789

SSF1, Ribosome biogenesis protein SSF1, yeastyeast

Predicted RBP Predictions only

Length 453 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
SSF1P38789 SSK2YNR031C 4740 nt1.75□□□□□ -2.13
SSF1P38789 STB6YKL072W 2301 nt1.74□□□□□ -2.13
SSF1P38789 FIG2YCR089W 4830 nt1.73□□□□□ -2.13
SSF1P38789 Q0143Q0143 153 nt1.73□□□□□ -2.13
SSF1P38789 tL(UAA)QtL(UAA)Q 85 nt1.72□□□□□ -2.13
SSF1P38789 YLR232WYLR232W 348 nt1.72□□□□□ -2.13
SSF1P38789 KAP120YPL125W 3099 nt1.71□□□□□ -2.14
SSF1P38789 CDC39YCR093W 6327 nt1.7□□□□□ -2.14
SSF1P38789 RPM2YML091C 3609 nt1.68□□□□□ -2.14
SSF1P38789 YLR399W-AYLR399W-A 105 nt1.68□□□□□ -2.14
SSF1P38789 CCH1YGR217W 6120 nt1.67□□□□□ -2.14
SSF1P38789 RAD9YDR217C 3930 nt1.66□□□□□ -2.14
SSF1P38789 PRP16YKR086W 3216 nt1.66□□□□□ -2.14
SSF1P38789 YOR329W-AYOR329W-A 210 nt1.65□□□□□ -2.15
SSF1P38789 YCL001W-BYCL001W-B 255 nt1.65□□□□□ -2.15
SSF1P38789 PIK1YNL267W 3201 nt1.64□□□□□ -2.15
SSF1P38789 QCR9YGR183C 201 nt1.62□□□□□ -2.15
SSF1P38789 YHR131W-AYHR131W-A 246 nt1.62□□□□□ -2.15
SSF1P38789 YNL067W-BYNL067W-B 141 nt1.62□□□□□ -2.15
SSF1P38789 YCR095W-AYCR095W-A 159 nt1.61□□□□□ -2.15
SSF1P38789 YPR160W-AYPR160W-A 81 nt1.61□□□□□ -2.15
SSF1P38789 tM(CAU)Q2tM(CAU)Q2 78 nt1.6□□□□□ -2.15
SSF1P38789 YGR130CYGR130C 2451 nt1.59□□□□□ -2.15
SSF1P38789 tH(GUG)E1tH(GUG)E1 72 nt1.59□□□□□ -2.15
SSF1P38789 tH(GUG)E2tH(GUG)E2 72 nt1.59□□□□□ -2.15
SSF1P38789 tH(GUG)G1tH(GUG)G1 72 nt1.59□□□□□ -2.15
SSF1P38789 tH(GUG)G2tH(GUG)G2 72 nt1.59□□□□□ -2.15
SSF1P38789 tH(GUG)HtH(GUG)H 72 nt1.59□□□□□ -2.15
SSF1P38789 tH(GUG)KtH(GUG)K 72 nt1.59□□□□□ -2.15
SSF1P38789 tH(GUG)MtH(GUG)M 72 nt1.59□□□□□ -2.15
SSF1P38789 IML1YJR138W 4755 nt1.58□□□□□ -2.16
SSF1P38789 BEM3YPL115C 3387 nt1.58□□□□□ -2.16
SSF1P38789 HKR1YDR420W 5409 nt1.58□□□□□ -2.16
SSF1P38789 tQ(UUG)E2tQ(UUG)E2 72 nt1.57□□□□□ -2.16
SSF1P38789 snR85snR85 171 nt1.56□□□□□ -2.16
SSF1P38789 OST4YDL232W 111 nt1.56□□□□□ -2.16
SSF1P38789 FYV8YGR196C 2454 nt1.55□□□□□ -2.16
SSF1P38789 YNL205CYNL205C 423 nt1.55□□□□□ -2.16
SSF1P38789 YSP1YHR155W 3687 nt1.55□□□□□ -2.16
SSF1P38789 YDR544CYDR544C 429 nt1.54□□□□□ -2.16
SSF1P38789 SOM1YEL059C-A 225 nt1.53□□□□□ -2.16
SSF1P38789 UBP3YER151C 2739 nt1.52□□□□□ -2.17
SSF1P38789 tN(GUU)QtN(GUU)Q 71 nt1.51□□□□□ -2.17
SSF1P38789 snR39BsnR39B 96 nt1.51□□□□□ -2.17
SSF1P38789 YDL073WYDL073W 2955 nt1.5□□□□□ -2.17
SSF1P38789 PET127YOR017W 2403 nt1.49□□□□□ -2.17
SSF1P38789 COG6YNL041C 2520 nt1.48□□□□□ -2.17
SSF1P38789 YBR099CYBR099C 384 nt1.48□□□□□ -2.17
SSF1P38789 NST1YNL091W 3723 nt1.47□□□□□ -2.17
SSF1P38789 SPT7YBR081C 3999 nt1.46□□□□□ -2.18
SSF1P38789 YDR210WYDR210W 228 nt1.44□□□□□ -2.18
SSF1P38789 tV(UAC)BtV(UAC)B 74 nt1.44□□□□□ -2.18
SSF1P38789 tV(UAC)DtV(UAC)D 74 nt1.44□□□□□ -2.18
SSF1P38789 YJL127W-AYJL127W-A 117 nt1.44□□□□□ -2.18
SSF1P38789 SIP4YJL089W 2490 nt1.43□□□□□ -2.18
SSF1P38789 YGR146C-AYGR146C-A 162 nt1.42□□□□□ -2.18
SSF1P38789 ULP2YIL031W 3105 nt1.42□□□□□ -2.18
SSF1P38789 YNL284C-BYNL284C-B 5268 nt1.41□□□□□ -2.18
SSF1P38789 STF2YGR008C 255 nt1.41□□□□□ -2.18
SSF1P38789 SCC2YDR180W 4482 nt1.38□□□□□ -2.19
SSF1P38789 GLG1YKR058W 1851 nt1.38□□□□□ -2.19
SSF1P38789 YIL071W-AYIL071W-A 477 nt1.38□□□□□ -2.19
SSF1P38789 YBR072C-AYBR072C-A 162 nt1.37□□□□□ -2.19
SSF1P38789 SEC1YDR164C 2175 nt1.35□□□□□ -2.19
SSF1P38789 LTE1YAL024C 4308 nt1.3□□□□□ -2.2
SSF1P38789 PMP2YEL017C-A 132 nt1.29□□□□□ -2.2
SSF1P38789 YPR117WYPR117W 7470 nt1.29□□□□□ -2.2
SSF1P38789 YLL006W-AYLL006W-A 177 nt1.28□□□□□ -2.2
SSF1P38789 BUD3YCL014W 4911 nt1.28□□□□□ -2.2
SSF1P38789 YJR029WYJR029W 5268 nt1.27□□□□□ -2.21
SSF1P38789 YPR137C-BYPR137C-B 5268 nt1.27□□□□□ -2.21
SSF1P38789 BIR1YJR089W 2865 nt1.26□□□□□ -2.21
SSF1P38789 HUG1YML058W-A 207 nt1.26□□□□□ -2.21
SSF1P38789 NNF2YGR089W 2811 nt1.25□□□□□ -2.21
SSF1P38789 RKR1YMR247C 4689 nt1.21□□□□□ -2.22
SSF1P38789 YNL103W-AYNL103W-A 90 nt1.2□□□□□ -2.22
SSF1P38789 snR61snR61 90 nt1.19□□□□□ -2.22
SSF1P38789 YNL266WYNL266W 420 nt1.18□□□□□ -2.22
SSF1P38789 TFB5YDR079C-A 219 nt1.16□□□□□ -2.22
SSF1P38789 CSE1YGL238W 2883 nt1.16□□□□□ -2.22
SSF1P38789 YMR326CYMR326C 309 nt1.13□□□□□ -2.23
SSF1P38789 VAM6YDL077C 3150 nt1.12□□□□□ -2.23
SSF1P38789 EMT1tM(CAU)D 73 nt1.12□□□□□ -2.23
SSF1P38789 EMT5tM(CAU)J1 73 nt1.12□□□□□ -2.23
SSF1P38789 EMT3tM(CAU)J2 73 nt1.12□□□□□ -2.23
SSF1P38789 EMT4tM(CAU)M 73 nt1.12□□□□□ -2.23
SSF1P38789 EMT2tM(CAU)O2 73 nt1.12□□□□□ -2.23
SSF1P38789 NIP1YMR309C 2439 nt1.11□□□□□ -2.23
SSF1P38789 BEM2YER155C 6504 nt1.11□□□□□ -2.23
SSF1P38789 PET111YMR257C 2403 nt1.1□□□□□ -2.23
SSF1P38789 BUL2YML111W 2763 nt1.08□□□□□ -2.24
SSF1P38789 YBR178WYBR178W 375 nt1.08□□□□□ -2.24
SSF1P38789 PAU24YBR301W 363 nt1.07□□□□□ -2.24
SSF1P38789 RCO1YMR075W 2055 nt1.07□□□□□ -2.24
SSF1P38789 SEC10YLR166C 2616 nt1.07□□□□□ -2.24
SSF1P38789 YDR524C-AYDR524C-A 120 nt1.06□□□□□ -2.24
SSF1P38789 DOP1YDR141C 5097 nt1.06□□□□□ -2.24
SSF1P38789 MLP1YKR095W 5628 nt1.05□□□□□ -2.24
SSF1P38789 YOR192C-BYOR192C-B 5313 nt1.05□□□□□ -2.24
SSF1P38789 YIL142C-AYIL142C-A 333 nt1.04□□□□□ -2.24
Retrieved 100 of 7,029 protein–RNA pairs in 9.7 ms