Protein–RNA interactions for Protein: P32588

PUB1, Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1, yeastyeast

Known RBP RIP-Chip data

Length 453 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
PUB1P32588 YPR097WYPR097W 3222 nt1.87□□□□□ -2.11
PUB1P32588 RAD50YNL250W 3939 nt1.87□□□□□ -2.11
PUB1P32588 YKL096C-BYKL096C-B 150 nt1.87□□□□□ -2.11
PUB1P32588 snR190snR190 190 nt1.87□□□□□ -2.11
PUB1P32588 YBR200W-AYBR200W-A 165 nt1.87□□□□□ -2.11
PUB1P32588 YLR149C-AYLR149C-A 87 nt1.86□□□□□ -2.11
PUB1P32588 NUT1YGL151W 3399 nt1.86□□□□□ -2.11
PUB1P32588 PAN2YGL094C 3348 nt1.85□□□□□ -2.11
PUB1P32588 RPM2YML091C 3609 nt1.84□□□□□ -2.11
PUB1P32588 NNF2YGR089W 2811 nt1.84□□□□□ -2.11
PUB1P32588 UBR2YLR024C 5619 nt1.84□□□□□ -2.12
PUB1P32588 YHR214C-BYHR214C-B 5382 nt1.84□□□□□ -2.12
PUB1P32588 UTP21YLR409C 2820 nt1.83□□□□□ -2.12
PUB1P32588 YDL073WYDL073W 2955 nt1.83□□□□□ -2.12
PUB1P32588 YHR180W-AYHR180W-A 183 nt1.83□□□□□ -2.12
PUB1P32588 snR14snR14 160 nt1.83□□□□□ -2.12
PUB1P32588 NEO1YIL048W 3456 nt1.83□□□□□ -2.12 RIP-Chip
PUB1P32588 SEC31YDL195W 3822 nt1.83□□□□□ -2.12
PUB1P32588 BEM3YPL115C 3387 nt1.81□□□□□ -2.12
PUB1P32588 USO1YDL058W 5373 nt1.81□□□□□ -2.12
PUB1P32588 MYO2YOR326W 4725 nt1.8□□□□□ -2.12
PUB1P32588 RAD9YDR217C 3930 nt1.8□□□□□ -2.12
PUB1P32588 GEA2YEL022W 4380 nt1.8□□□□□ -2.12
PUB1P32588 RTT101YJL047C 2529 nt1.79□□□□□ -2.12
PUB1P32588 YDL159W-AYDL159W-A 132 nt1.78□□□□□ -2.12 RIP-Chip
PUB1P32588 SMC4YLR086W 4257 nt1.77□□□□□ -2.13
PUB1P32588 tD(GUC)QtD(GUC)Q 75 nt1.77□□□□□ -2.13
PUB1P32588 YLR299C-AYLR299C-A 93 nt1.77□□□□□ -2.13
PUB1P32588 MGA2YIR033W 3342 nt1.77□□□□□ -2.13
PUB1P32588 KIP1YBL063W 3336 nt1.75□□□□□ -2.13
PUB1P32588 EMC5YIL027C 426 nt1.75□□□□□ -2.13
PUB1P32588 ANS1YHR126C 480 nt1.74□□□□□ -2.13
PUB1P32588 SAC3YDR159W 3906 nt1.74□□□□□ -2.13
PUB1P32588 MYO4YAL029C 4416 nt1.73□□□□□ -2.13
PUB1P32588 STO1YMR125W 2586 nt1.73□□□□□ -2.13 RIP-Chip
PUB1P32588 CHS1YNL192W 3396 nt1.72□□□□□ -2.13
PUB1P32588 PKH3YDR466W 2697 nt1.71□□□□□ -2.14
PUB1P32588 YPR160W-AYPR160W-A 81 nt1.71□□□□□ -2.14
PUB1P32588 TUS1YLR425W 3924 nt1.7□□□□□ -2.14
PUB1P32588 YOR093CYOR093C 4947 nt1.7□□□□□ -2.14
PUB1P32588 KAP122YGL016W 3246 nt1.69□□□□□ -2.14 RIP-Chip
PUB1P32588 EST1YLR233C 2100 nt1.69□□□□□ -2.14
PUB1P32588 HER1YOR227W 3741 nt1.69□□□□□ -2.14
PUB1P32588 YDL159C-BYDL159C-B 177 nt1.69□□□□□ -2.14
PUB1P32588 FAB1YFR019W 6837 nt1.69□□□□□ -2.14
PUB1P32588 YML054C-AYML054C-A 159 nt1.68□□□□□ -2.14
PUB1P32588 snR38snR38 95 nt1.68□□□□□ -2.14
PUB1P32588 RPL41AYDL184C 78 nt1.67□□□□□ -2.14
PUB1P32588 tN(GUU)QtN(GUU)Q 71 nt1.67□□□□□ -2.14
PUB1P32588 MON2YNL297C 4911 nt1.67□□□□□ -2.14
PUB1P32588 PET127YOR017W 2403 nt1.67□□□□□ -2.14
PUB1P32588 PRP16YKR086W 3216 nt1.66□□□□□ -2.14
PUB1P32588 YHR180C-BYHR180C-B 105 nt1.66□□□□□ -2.14
PUB1P32588 REV3YPL167C 4515 nt1.66□□□□□ -2.14
PUB1P32588 SKI7YOR076C 2244 nt1.66□□□□□ -2.14
PUB1P32588 AI1Q0050 2505 nt1.65□□□□□ -2.15
PUB1P32588 snR69snR69 101 nt1.64□□□□□ -2.15
PUB1P32588 YGR122C-AYGR122C-A 129 nt1.63□□□□□ -2.15 RIP-Chip
PUB1P32588 PMD1YER132C 5262 nt1.63□□□□□ -2.15 RIP-Chip
PUB1P32588 IRC20YLR247C 4671 nt1.63□□□□□ -2.15
PUB1P32588 PEP1YBL017C 4740 nt1.62□□□□□ -2.15
PUB1P32588 YBR296C-AYBR296C-A 120 nt1.62□□□□□ -2.15
PUB1P32588 YMR272W-BYMR272W-B 108 nt1.61□□□□□ -2.15
PUB1P32588 MYO1YHR023W 5787 nt1.61□□□□□ -2.15
PUB1P32588 CSE1YGL238W 2883 nt1.6□□□□□ -2.15
PUB1P32588 DNF3YMR162C 4971 nt1.59□□□□□ -2.15
PUB1P32588 SEC8YPR055W 3198 nt1.58□□□□□ -2.16
PUB1P32588 SXM1YDR395W 2835 nt1.58□□□□□ -2.16
PUB1P32588 SKI3YPR189W 4299 nt1.57□□□□□ -2.16
PUB1P32588 TDA9YML081W 3756 nt1.57□□□□□ -2.16
PUB1P32588 NIP1YMR309C 2439 nt1.57□□□□□ -2.16 RIP-Chip
PUB1P32588 RDS3YPR094W 324 nt1.57□□□□□ -2.16
PUB1P32588 APL3YBL037W 3078 nt1.57□□□□□ -2.16
PUB1P32588 YLR422WYLR422W 5799 nt1.55□□□□□ -2.16
PUB1P32588 KCS1YDR017C 3153 nt1.55□□□□□ -2.16
PUB1P32588 ROM2YLR371W 4071 nt1.55□□□□□ -2.16
PUB1P32588 TRM732YMR259C 4263 nt1.54□□□□□ -2.16
PUB1P32588 YLR399W-AYLR399W-A 105 nt1.54□□□□□ -2.16
PUB1P32588 SEC3YER008C 4011 nt1.54□□□□□ -2.16
PUB1P32588 YSP1YHR155W 3687 nt1.53□□□□□ -2.16
PUB1P32588 ULP2YIL031W 3105 nt1.53□□□□□ -2.16 RIP-Chip
PUB1P32588 CFT1YDR301W 4074 nt1.52□□□□□ -2.17
PUB1P32588 MSH3YCR092C 3057 nt1.52□□□□□ -2.17
PUB1P32588 TMA7YLR262C-A 195 nt1.51□□□□□ -2.17
PUB1P32588 HUG1YML058W-A 207 nt1.51□□□□□ -2.17
PUB1P32588 VPS15YBR097W 4365 nt1.5□□□□□ -2.17
PUB1P32588 ATG9YDL149W 2994 nt1.5□□□□□ -2.17
PUB1P32588 IRA1YBR140C 9279 nt1.49□□□□□ -2.17
PUB1P32588 NUP188YML103C 4968 nt1.49□□□□□ -2.17
PUB1P32588 SWI4YER111C 3282 nt1.49□□□□□ -2.17
PUB1P32588 YMR247W-AYMR247W-A 144 nt1.49□□□□□ -2.17
PUB1P32588 MEC1YBR136W 7107 nt1.49□□□□□ -2.17
PUB1P32588 SSK2YNR031C 4740 nt1.48□□□□□ -2.17
PUB1P32588 PAU12YGR294W 363 nt1.48□□□□□ -2.17
PUB1P32588 PET111YMR257C 2403 nt1.47□□□□□ -2.17
PUB1P32588 tT(UGU)HtT(UGU)H 72 nt1.46□□□□□ -2.18
PUB1P32588 CDC39YCR093W 6327 nt1.45□□□□□ -2.18
PUB1P32588 YPL060C-AYPL060C-A 3315 nt1.45□□□□□ -2.18
PUB1P32588 YCS4YLR272C 3531 nt1.45□□□□□ -2.18
PUB1P32588 BRR2YER172C 6492 nt1.43□□□□□ -2.18
Retrieved 100 of 7,029 protein–RNA pairs in 15.5 ms