Protein–RNA interactions for Protein: P53960

YNL040W, Putative alanyl-tRNA editing protein alaX, yeastyeast

Predicted RBP Predictions only

Length 456 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
YNL040WP53960 MCM10YIL150C 1716 nt0.74□□□□□ -2.29
YNL040WP53960 RPS25BYLR333C 327 nt0.73□□□□□ -2.29
YNL040WP53960 YOR282WYOR282W 321 nt0.73□□□□□ -2.29
YNL040WP53960 YPL225WYPL225W 441 nt0.73□□□□□ -2.29
YNL040WP53960 RKR1YMR247C 4689 nt0.73□□□□□ -2.29
YNL040WP53960 SPO21YOL091W 1830 nt0.73□□□□□ -2.29
YNL040WP53960 tT(AGU)BtT(AGU)B 73 nt0.72□□□□□ -2.29
YNL040WP53960 tT(AGU)CtT(AGU)C 73 nt0.72□□□□□ -2.29
YNL040WP53960 tT(AGU)DtT(AGU)D 73 nt0.72□□□□□ -2.29
YNL040WP53960 tT(AGU)HtT(AGU)H 73 nt0.72□□□□□ -2.29
YNL040WP53960 tT(AGU)I1tT(AGU)I1 73 nt0.72□□□□□ -2.29
YNL040WP53960 tT(AGU)I2tT(AGU)I2 73 nt0.72□□□□□ -2.29
YNL040WP53960 tT(AGU)JtT(AGU)J 73 nt0.72□□□□□ -2.29
YNL040WP53960 tT(AGU)N1tT(AGU)N1 73 nt0.72□□□□□ -2.29
YNL040WP53960 tT(AGU)N2tT(AGU)N2 73 nt0.72□□□□□ -2.29
YNL040WP53960 tT(AGU)O1tT(AGU)O1 73 nt0.72□□□□□ -2.29
YNL040WP53960 tT(AGU)O2tT(AGU)O2 73 nt0.72□□□□□ -2.29
YNL040WP53960 YIL115W-AYIL115W-A 372 nt0.72□□□□□ -2.29
YNL040WP53960 YJL120WYJL120W 324 nt0.72□□□□□ -2.29
YNL040WP53960 YDL240C-AYDL240C-A 138 nt0.71□□□□□ -2.3
YNL040WP53960 tR(ACG)Q2tR(ACG)Q2 74 nt0.71□□□□□ -2.3
YNL040WP53960 BFR2YDR299W 1605 nt0.71□□□□□ -2.3
YNL040WP53960 SGF11YPL047W 300 nt0.7□□□□□ -2.3
YNL040WP53960 snR36snR36 182 nt0.7□□□□□ -2.3
YNL040WP53960 YMR160WYMR160W 2451 nt0.7□□□□□ -2.3
YNL040WP53960 YMR272W-AYMR272W-A 114 nt0.69□□□□□ -2.3
YNL040WP53960 YOL014WYOL014W 375 nt0.69□□□□□ -2.3
YNL040WP53960 NOP9YJL010C 2001 nt0.68□□□□□ -2.3
YNL040WP53960 YPL044CYPL044C 549 nt0.68□□□□□ -2.3
YNL040WP53960 snR60snR60 104 nt0.67□□□□□ -2.3
YNL040WP53960 YHR063W-AYHR063W-A 336 nt0.67□□□□□ -2.3
YNL040WP53960 YKL145W-AYKL145W-A 93 nt0.67□□□□□ -2.3
YNL040WP53960 YNL211CYNL211C 261 nt0.67□□□□□ -2.3
YNL040WP53960 COG8YML071C 1824 nt0.66□□□□□ -2.3
YNL040WP53960 YDL073WYDL073W 2955 nt0.66□□□□□ -2.3
YNL040WP53960 YDR183C-AYDR183C-A 258 nt0.66□□□□□ -2.3
YNL040WP53960 YFL032WYFL032W 321 nt0.66□□□□□ -2.3
YNL040WP53960 YMR321CYMR321C 318 nt0.66□□□□□ -2.3
YNL040WP53960 HTL1YCR020W-B 237 nt0.65□□□□□ -2.31
YNL040WP53960 ATP6Q0085 780 nt0.65□□□□□ -2.31
YNL040WP53960 YFR012W-AYFR012W-A 87 nt0.65□□□□□ -2.31
YNL040WP53960 RPS27BYHR021C 249 nt0.65□□□□□ -2.31
YNL040WP53960 YIL032CYIL032C 357 nt0.65□□□□□ -2.31
YNL040WP53960 YPR159C-AYPR159C-A 102 nt0.65□□□□□ -2.31
YNL040WP53960 VIK1YPL253C 1944 nt0.64□□□□□ -2.31
YNL040WP53960 YGL149WYGL149W 306 nt0.64□□□□□ -2.31
YNL040WP53960 YKL118WYKL118W 312 nt0.64□□□□□ -2.31
YNL040WP53960 UTP20YBL004W 7482 nt0.64□□□□□ -2.31
YNL040WP53960 PMP1YCR024C-A 123 nt0.63□□□□□ -2.31
YNL040WP53960 PAA1YDR071C 576 nt0.63□□□□□ -2.31
YNL040WP53960 YFL063WYFL063W 456 nt0.63□□□□□ -2.31
YNL040WP53960 ASE1YOR058C 2658 nt0.63□□□□□ -2.31
YNL040WP53960 YDR413CYDR413C 576 nt0.62□□□□□ -2.31
YNL040WP53960 YMR031W-AYMR031W-A 327 nt0.62□□□□□ -2.31
YNL040WP53960 YMR193C-AYMR193C-A 387 nt0.62□□□□□ -2.31
YNL040WP53960 YOR218CYOR218C 420 nt0.62□□□□□ -2.31
YNL040WP53960 CSE2YNR010W 450 nt0.61□□□□□ -2.31
YNL040WP53960 YDR354C-AYDR354C-A 144 nt0.6□□□□□ -2.31
YNL040WP53960 YER097WYER097W 330 nt0.6□□□□□ -2.31
YNL040WP53960 RPL26BYGR034W 384 nt0.6□□□□□ -2.31
YNL040WP53960 NPR2YEL062W 1848 nt0.59□□□□□ -2.31
YNL040WP53960 PRP16YKR086W 3216 nt0.59□□□□□ -2.31
YNL040WP53960 CHS6YJL099W 2241 nt0.58□□□□□ -2.32
YNL040WP53960 YKL136WYKL136W 399 nt0.58□□□□□ -2.32
YNL040WP53960 YDL185C-AYDL185C-A 228 nt0.57□□□□□ -2.32
YNL040WP53960 LTE1YAL024C 4308 nt0.56□□□□□ -2.32
YNL040WP53960 YDR524W-CYDR524W-C 90 nt0.56□□□□□ -2.32
YNL040WP53960 STE5YDR103W 2754 nt0.56□□□□□ -2.32
YNL040WP53960 YML002WYML002W 2214 nt0.56□□□□□ -2.32
YNL040WP53960 YCR018C-AYCR018C-A 255 nt0.55□□□□□ -2.32
YNL040WP53960 RPL39YJL189W 156 nt0.55□□□□□ -2.32
YNL040WP53960 YAL067W-AYAL067W-A 228 nt0.55□□□□□ -2.32
YNL040WP53960 YNL028WYNL028W 318 nt0.55□□□□□ -2.32
YNL040WP53960 TRS65YGR166W 1683 nt0.55□□□□□ -2.32
YNL040WP53960 UTP10YJL109C 5310 nt0.54□□□□□ -2.32
YNL040WP53960 YJL026C-AYJL026C-A 222 nt0.53□□□□□ -2.32
YNL040WP53960 YOR015WYOR015W 360 nt0.53□□□□□ -2.32
YNL040WP53960 snR190snR190 190 nt0.53□□□□□ -2.32
YNL040WP53960 YPR160W-AYPR160W-A 81 nt0.52□□□□□ -2.33
YNL040WP53960 ULP2YIL031W 3105 nt0.52□□□□□ -2.33
YNL040WP53960 FYV10YIL097W 1551 nt0.52□□□□□ -2.33
YNL040WP53960 SEC8YPR055W 3198 nt0.52□□□□□ -2.33
YNL040WP53960 COX5BYIL111W 456 nt0.51□□□□□ -2.33
YNL040WP53960 YJL197C-AYJL197C-A 282 nt0.51□□□□□ -2.33
YNL040WP53960 YLL019W-AYLL019W-A 93 nt0.51□□□□□ -2.33
YNL040WP53960 YMR307C-AYMR307C-A 195 nt0.51□□□□□ -2.33
YNL040WP53960 FMP27YLR454W 7887 nt0.51□□□□□ -2.33
YNL040WP53960 RAD61YDR014W 1944 nt0.5□□□□□ -2.33
YNL040WP53960 COY1YKL179C 2040 nt0.5□□□□□ -2.33
YNL040WP53960 PRP5YBR237W 2550 nt0.49□□□□□ -2.33
YNL040WP53960 YLR120W-AYLR120W-A 102 nt0.49□□□□□ -2.33
YNL040WP53960 YGR069WYGR069W 336 nt0.48□□□□□ -2.33
YNL040WP53960 YLR282CYLR282C 342 nt0.48□□□□□ -2.33
YNL040WP53960 YLR399W-AYLR399W-A 105 nt0.48□□□□□ -2.33
YNL040WP53960 YEL020C-BYEL020C-B 198 nt0.47□□□□□ -2.33
YNL040WP53960 YJL127W-AYJL127W-A 117 nt0.47□□□□□ -2.33
YNL040WP53960 YOR072W-BYOR072W-B 162 nt0.47□□□□□ -2.33
YNL040WP53960 YPR092WYPR092W 306 nt0.47□□□□□ -2.33
YNL040WP53960 tN(GUU)QtN(GUU)Q 71 nt0.46□□□□□ -2.34
YNL040WP53960 YIL134C-AYIL134C-A 204 nt0.46□□□□□ -2.34
Retrieved 100 of 7,029 protein–RNA pairs in 70.2 ms