Protein–RNA interactions for Protein: P40968

CDC40, Pre-mRNA-processing factor 17, yeastyeast

Predicted RBP Predictions only

Length 455 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC40P40968 tT(AGU)O2tT(AGU)O2 73 nt0.48□□□□□ -2.33
CDC40P40968 YMR160WYMR160W 2451 nt0.47□□□□□ -2.33
CDC40P40968 YIL142C-AYIL142C-A 333 nt0.47□□□□□ -2.33
CDC40P40968 YAR053WYAR053W 297 nt0.47□□□□□ -2.33
CDC40P40968 RPS25BYLR333C 327 nt0.47□□□□□ -2.33
CDC40P40968 YHR007C-AYHR007C-A 216 nt0.46□□□□□ -2.34
CDC40P40968 YJL127W-AYJL127W-A 117 nt0.46□□□□□ -2.34
CDC40P40968 YMR001C-AYMR001C-A 231 nt0.46□□□□□ -2.34
CDC40P40968 YSP1YHR155W 3687 nt0.46□□□□□ -2.34
CDC40P40968 YHR138CYHR138C 345 nt0.45□□□□□ -2.34
CDC40P40968 YKL145W-AYKL145W-A 93 nt0.45□□□□□ -2.34
CDC40P40968 YPL225WYPL225W 441 nt0.45□□□□□ -2.34
CDC40P40968 FYV10YIL097W 1551 nt0.45□□□□□ -2.34
CDC40P40968 PET111YMR257C 2403 nt0.44□□□□□ -2.34
CDC40P40968 COX5BYIL111W 456 nt0.44□□□□□ -2.34
CDC40P40968 YMR321CYMR321C 318 nt0.44□□□□□ -2.34
CDC40P40968 HTB2YBL002W 396 nt0.43□□□□□ -2.34
CDC40P40968 LEE1YPL054W 906 nt0.43□□□□□ -2.34
CDC40P40968 SEC8YPR055W 3198 nt0.43□□□□□ -2.34
CDC40P40968 TAR1YLR154W-C 375 nt0.42□□□□□ -2.34
CDC40P40968 RPL35AYDL191W 363 nt0.41□□□□□ -2.34
CDC40P40968 SBH1YER087C-B 249 nt0.41□□□□□ -2.34
CDC40P40968 YHL046W-AYHL046W-A 327 nt0.41□□□□□ -2.34
CDC40P40968 tW(UCA)QtW(UCA)Q 74 nt0.41□□□□□ -2.34
CDC40P40968 YJL120WYJL120W 324 nt0.4□□□□□ -2.35
CDC40P40968 YPR160W-AYPR160W-A 81 nt0.4□□□□□ -2.35
CDC40P40968 ASE1YOR058C 2658 nt0.4□□□□□ -2.35
CDC40P40968 YCR018C-AYCR018C-A 255 nt0.39□□□□□ -2.35
CDC40P40968 YAL068W-AYAL068W-A 255 nt0.39□□□□□ -2.35
CDC40P40968 YOL014WYOL014W 375 nt0.39□□□□□ -2.35
CDC40P40968 BIL1YOR304C-A 231 nt0.39□□□□□ -2.35
CDC40P40968 ESP1YGR098C 4893 nt0.39□□□□□ -2.35
CDC40P40968 YOR293C-AYOR293C-A 150 nt0.38□□□□□ -2.35
CDC40P40968 YBL100W-BYBL100W-B 5313 nt0.37□□□□□ -2.35
CDC40P40968 VIK1YPL253C 1944 nt0.37□□□□□ -2.35
CDC40P40968 PAU12YGR294W 363 nt0.37□□□□□ -2.35
CDC40P40968 YLR399W-AYLR399W-A 105 nt0.37□□□□□ -2.35
CDC40P40968 YOR192C-BYOR192C-B 5313 nt0.37□□□□□ -2.35
CDC40P40968 YDR048CYDR048C 315 nt0.36□□□□□ -2.35
CDC40P40968 SSS1YDR086C 243 nt0.36□□□□□ -2.35
CDC40P40968 snR190snR190 190 nt0.36□□□□□ -2.35
CDC40P40968 PRP5YBR237W 2550 nt0.36□□□□□ -2.35
CDC40P40968 YDL185C-AYDL185C-A 228 nt0.35□□□□□ -2.35
CDC40P40968 Q0144Q0144 330 nt0.35□□□□□ -2.35
CDC40P40968 QCR9YGR183C 201 nt0.35□□□□□ -2.35
CDC40P40968 ABF2YMR072W 552 nt0.35□□□□□ -2.35
CDC40P40968 PRP42YDR235W 1635 nt0.35□□□□□ -2.35
CDC40P40968 OST4YDL232W 111 nt0.34□□□□□ -2.36
CDC40P40968 TRS65YGR166W 1683 nt0.33□□□□□ -2.36
CDC40P40968 YAL067W-AYAL067W-A 228 nt0.33□□□□□ -2.36
CDC40P40968 YLR154W-FYLR154W-F 141 nt0.33□□□□□ -2.36
CDC40P40968 YMR307C-AYMR307C-A 195 nt0.33□□□□□ -2.36
CDC40P40968 AI1Q0050 2505 nt0.33□□□□□ -2.36
CDC40P40968 BIR1YJR089W 2865 nt0.33□□□□□ -2.36
CDC40P40968 YLR222C-AYLR222C-A 231 nt0.32□□□□□ -2.36
CDC40P40968 YGR035CYGR035C 351 nt0.31□□□□□ -2.36
CDC40P40968 MLP1YKR095W 5628 nt0.31□□□□□ -2.36
CDC40P40968 YAL063C-AYAL063C-A 291 nt0.3□□□□□ -2.36
CDC40P40968 YDR354C-AYDR354C-A 144 nt0.29□□□□□ -2.36
CDC40P40968 RPS27BYHR021C 249 nt0.28□□□□□ -2.36
CDC40P40968 YIL115W-AYIL115W-A 372 nt0.28□□□□□ -2.36
CDC40P40968 YKL136WYKL136W 399 nt0.28□□□□□ -2.36
CDC40P40968 CSE2YNR010W 450 nt0.28□□□□□ -2.36
CDC40P40968 COG8YML071C 1824 nt0.28□□□□□ -2.36
CDC40P40968 tN(GUU)QtN(GUU)Q 71 nt0.27□□□□□ -2.37
CDC40P40968 BEM3YPL115C 3387 nt0.26□□□□□ -2.37
CDC40P40968 YOR345CYOR345C 351 nt0.26□□□□□ -2.37
CDC40P40968 ULP2YIL031W 3105 nt0.25□□□□□ -2.37
CDC40P40968 HAL9YOL089C 3093 nt0.25□□□□□ -2.37
CDC40P40968 YDR157WYDR157W 402 nt0.25□□□□□ -2.37
CDC40P40968 THO2YNL139C 4794 nt0.24□□□□□ -2.37
CDC40P40968 VAR1Q0140 1197 nt0.24□□□□□ -2.37
CDC40P40968 YLR282CYLR282C 342 nt0.24□□□□□ -2.37
CDC40P40968 STE5YDR103W 2754 nt0.24□□□□□ -2.37
CDC40P40968 NNF2YGR089W 2811 nt0.23□□□□□ -2.37
CDC40P40968 YPR092WYPR092W 306 nt0.23□□□□□ -2.37
CDC40P40968 COY1YKL179C 2040 nt0.22□□□□□ -2.37
CDC40P40968 ORC3YLL004W 1851 nt0.21□□□□□ -2.38
CDC40P40968 snR60snR60 104 nt0.21□□□□□ -2.38
CDC40P40968 YDR371C-AYDR371C-A 105 nt0.21□□□□□ -2.38
CDC40P40968 YPR016W-AYPR016W-A 261 nt0.2□□□□□ -2.38
CDC40P40968 ULI1YFR026C 510 nt0.19□□□□□ -2.38
CDC40P40968 RPS26AYGL189C 360 nt0.19□□□□□ -2.38
CDC40P40968 YJL026C-AYJL026C-A 222 nt0.19□□□□□ -2.38
CDC40P40968 YER078W-AYER078W-A 165 nt0.18□□□□□ -2.38
CDC40P40968 YOL013W-AYOL013W-A 192 nt0.18□□□□□ -2.38
CDC40P40968 YOR161W-AYOR161W-A 81 nt0.16□□□□□ -2.38
CDC40P40968 YEL020C-BYEL020C-B 198 nt0.15□□□□□ -2.39
CDC40P40968 BLI1YKL061W 342 nt0.15□□□□□ -2.39
CDC40P40968 YNL146WYNL146W 303 nt0.15□□□□□ -2.39
CDC40P40968 YNL054W-BYNL054W-B 5250 nt0.14□□□□□ -2.39
CDC40P40968 YCR022CYCR022C 345 nt0.14□□□□□ -2.39
CDC40P40968 YGL123C-AYGL123C-A 231 nt0.14□□□□□ -2.39
CDC40P40968 IQG1YPL242C 4488 nt0.14□□□□□ -2.39
CDC40P40968 YIL032CYIL032C 357 nt0.13□□□□□ -2.39
CDC40P40968 YLL006W-AYLL006W-A 177 nt0.13□□□□□ -2.39
CDC40P40968 MLP2YIL149C 5040 nt0.13□□□□□ -2.39
CDC40P40968 YJL197C-AYJL197C-A 282 nt0.12□□□□□ -2.39
CDC40P40968 NIP1YMR309C 2439 nt0.11□□□□□ -2.39
CDC40P40968 YKL100W-AYKL100W-A 90 nt0.11□□□□□ -2.39
Retrieved 100 of 7,029 protein–RNA pairs in 66.4 ms