Protein–RNA interactions for Protein: P39962

YCK3, Casein kinase I homolog 3, yeastyeast

Predictions only

Length 524 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
YCK3P39962 CTR9YOL145C 3234 nt3.36□□□□□ -1.87
YCK3P39962 HEF3YNL014W 3135 nt3.35□□□□□ -1.87
YCK3P39962 IRE1YHR079C 3348 nt3.35□□□□□ -1.87
YCK3P39962 YHR180W-AYHR180W-A 183 nt3.35□□□□□ -1.87
YCK3P39962 SRO7YPR032W 3102 nt3.35□□□□□ -1.87
YCK3P39962 NAB6YML117W 3405 nt3.34□□□□□ -1.87
YCK3P39962 PDR12YPL058C 4536 nt3.34□□□□□ -1.87
YCK3P39962 YGR130CYGR130C 2451 nt3.34□□□□□ -1.88
YCK3P39962 YBT1YLL048C 4986 nt3.33□□□□□ -1.88
YCK3P39962 ROM1YGR070W 3468 nt3.33□□□□□ -1.88
YCK3P39962 GIP3YPL137C 3831 nt3.33□□□□□ -1.88
YCK3P39962 SSN2YDR443C 4263 nt3.33□□□□□ -1.88
YCK3P39962 snR67snR67 82 nt3.31□□□□□ -1.88
YCK3P39962 YSP1YHR155W 3687 nt3.31□□□□□ -1.88
YCK3P39962 YAR009CYAR009C 3591 nt3.3□□□□□ -1.88
YCK3P39962 snR77snR77 88 nt3.3□□□□□ -1.88
YCK3P39962 YER090C-AYER090C-A 90 nt3.3□□□□□ -1.88
YCK3P39962 NCR1YPL006W 3513 nt3.3□□□□□ -1.88
YCK3P39962 SRB8YCR081W 4284 nt3.27□□□□□ -1.89
YCK3P39962 SWH1YAR042W 3567 nt3.26□□□□□ -1.89
YCK3P39962 BCK1YJL095W 4437 nt3.24□□□□□ -1.89
YCK3P39962 YOL014WYOL014W 375 nt3.23□□□□□ -1.89
YCK3P39962 PET309YLR067C 2898 nt3.23□□□□□ -1.89
YCK3P39962 KRE5YOR336W 4098 nt3.23□□□□□ -1.89
YCK3P39962 AUS1YOR011W 4185 nt3.22□□□□□ -1.89
YCK3P39962 TFC4YGR047C 3078 nt3.21□□□□□ -1.9
YCK3P39962 MSH3YCR092C 3057 nt3.21□□□□□ -1.9
YCK3P39962 LOS1YKL205W 3303 nt3.2□□□□□ -1.9
YCK3P39962 NUP159YIL115C 4383 nt3.19□□□□□ -1.9
YCK3P39962 YGL140CYGL140C 3660 nt3.19□□□□□ -1.9
YCK3P39962 SIR4YDR227W 4077 nt3.19□□□□□ -1.9
YCK3P39962 STU1YBL034C 4542 nt3.18□□□□□ -1.9
YCK3P39962 ECM21YBL101C 3354 nt3.18□□□□□ -1.9
YCK3P39962 RPL41BYDL133C-A 78 nt3.18□□□□□ -1.9
YCK3P39962 SPT6YGR116W 4356 nt3.17□□□□□ -1.9
YCK3P39962 NUT1YGL151W 3399 nt3.16□□□□□ -1.9
YCK3P39962 MET18YIL128W 3099 nt3.16□□□□□ -1.9
YCK3P39962 VPS8YAL002W 3825 nt3.15□□□□□ -1.9
YCK3P39962 KOG1YHR186C 4674 nt3.14□□□□□ -1.91
YCK3P39962 SUP56tL(CAA)A 82 nt3.14□□□□□ -1.91
YCK3P39962 SUP53tL(CAA)C 82 nt3.14□□□□□ -1.91
YCK3P39962 tL(CAA)DtL(CAA)D 82 nt3.14□□□□□ -1.91
YCK3P39962 tL(CAA)G1tL(CAA)G1 82 nt3.14□□□□□ -1.91
YCK3P39962 SUP54tL(CAA)G2 82 nt3.14□□□□□ -1.91
YCK3P39962 tL(CAA)G3tL(CAA)G3 82 nt3.14□□□□□ -1.91
YCK3P39962 tL(CAA)KtL(CAA)K 82 nt3.14□□□□□ -1.91
YCK3P39962 tL(CAA)LtL(CAA)L 82 nt3.14□□□□□ -1.91
YCK3P39962 tL(CAA)MtL(CAA)M 82 nt3.14□□□□□ -1.91
YCK3P39962 tL(CAA)NtL(CAA)N 82 nt3.14□□□□□ -1.91
YCK3P39962 GEA2YEL022W 4380 nt3.14□□□□□ -1.91
YCK3P39962 NMD2YHR077C 3270 nt3.14□□□□□ -1.91
YCK3P39962 tN(GUU)QtN(GUU)Q 71 nt3.13□□□□□ -1.91
YCK3P39962 SMC3YJL074C 3693 nt3.12□□□□□ -1.91
YCK3P39962 UTP22YGR090W 3714 nt3.12□□□□□ -1.91
YCK3P39962 UBP2YOR124C 3819 nt3.12□□□□□ -1.91
YCK3P39962 MSN5YDR335W 3675 nt3.11□□□□□ -1.91
YCK3P39962 FLO5YHR211W 3228 nt3.11□□□□□ -1.91
YCK3P39962 SPF1YEL031W 3648 nt3.1□□□□□ -1.91
YCK3P39962 YJL052C-AYJL052C-A 120 nt3.1□□□□□ -1.91
YCK3P39962 ENA1YDR040C 3276 nt3.09□□□□□ -1.91
YCK3P39962 TDA9YML081W 3756 nt3.08□□□□□ -1.92
YCK3P39962 YOL098CYOL098C 3114 nt3.07□□□□□ -1.92
YCK3P39962 DSE4YNR067C 3354 nt3.07□□□□□ -1.92
YCK3P39962 BMS1YPL217C 3552 nt3.06□□□□□ -1.92
YCK3P39962 GEA1YJR031C 4227 nt3.06□□□□□ -1.92
YCK3P39962 YLR399W-AYLR399W-A 105 nt3.06□□□□□ -1.92
YCK3P39962 RAD50YNL250W 3939 nt3.04□□□□□ -1.92
YCK3P39962 ARO1YDR127W 4767 nt3.03□□□□□ -1.92
YCK3P39962 SPA2YLL021W 4401 nt3.02□□□□□ -1.93
YCK3P39962 YDR464C-AYDR464C-A 189 nt3.02□□□□□ -1.93
YCK3P39962 SOV1YMR066W 2697 nt3.01□□□□□ -1.93
YCK3P39962 STH1YIL126W 4080 nt3.01□□□□□ -1.93
YCK3P39962 IRC20YLR247C 4671 nt3□□□□□ -1.93
YCK3P39962 YOR316C-AYOR316C-A 210 nt3□□□□□ -1.93
YCK3P39962 INO80YGL150C 4470 nt2.99□□□□□ -1.93
YCK3P39962 DNA2YHR164C 4569 nt2.98□□□□□ -1.93
YCK3P39962 SBH2YER019C-A 267 nt2.98□□□□□ -1.93
YCK3P39962 YGR027W-BYGR027W-B 5268 nt2.96□□□□□ -1.94
YCK3P39962 YLR227W-BYLR227W-B 5268 nt2.96□□□□□ -1.94
YCK3P39962 YPR158C-DYPR158C-D 5268 nt2.96□□□□□ -1.94
YCK3P39962 YOR343W-BYOR343W-B 5313 nt2.96□□□□□ -1.94
YCK3P39962 URA2YJL130C 6645 nt2.96□□□□□ -1.94
YCK3P39962 tV(CAC)DtV(CAC)D 73 nt2.95□□□□□ -1.94
YCK3P39962 tV(CAC)HtV(CAC)H 73 nt2.95□□□□□ -1.94
YCK3P39962 DNF1YER166W 4716 nt2.94□□□□□ -1.94
YCK3P39962 NUP145YGL092W 3954 nt2.94□□□□□ -1.94
YCK3P39962 MDN1YLR106C 14733 nt2.94□□□□□ -1.94
YCK3P39962 DRS2YAL026C 4068 nt2.93□□□□□ -1.94
YCK3P39962 APL3YBL037W 3078 nt2.93□□□□□ -1.94
YCK3P39962 TAF2YCR042C 4224 nt2.93□□□□□ -1.94
YCK3P39962 CIN8YEL061C 3003 nt2.93□□□□□ -1.94
YCK3P39962 RRP5YMR229C 5190 nt2.92□□□□□ -1.94
YCK3P39962 CSR2YPR030W 3366 nt2.92□□□□□ -1.94
YCK3P39962 HER1YOR227W 3741 nt2.91□□□□□ -1.94
YCK3P39962 POL2YNL262W 6669 nt2.91□□□□□ -1.94
YCK3P39962 AMS1YGL156W 3252 nt2.9□□□□□ -1.94
YCK3P39962 TRS120YDR407C 3870 nt2.9□□□□□ -1.95
YCK3P39962 HSL1YKL101W 4557 nt2.9□□□□□ -1.95
YCK3P39962 YLL006W-AYLL006W-A 177 nt2.89□□□□□ -1.95
YCK3P39962 ILS1YBL076C 3219 nt2.89□□□□□ -1.95
Retrieved 100 of 7,029 protein–RNA pairs in 55.4 ms