Protein–RNA interactions for Protein: Q9JIS3

Smco4, Single-pass membrane and coiled-coil domain-containing protein 4, mousemouse

Predictions only

Length 59 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smco4Q9JIS3 Nxnl1-201ENSMUST00000048243 2285 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
Smco4Q9JIS3 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC14.04□□□□□ -0.16
Smco4Q9JIS3 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smco4Q9JIS3 Anks1-203ENSMUST00000114842 5610 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smco4Q9JIS3 AC013548.1-201ENSMUST00000228850 4738 ntAPPRIS P1 BASIC14.04□□□□□ -0.16
Smco4Q9JIS3 Spg21-201ENSMUST00000034955 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smco4Q9JIS3 Cep44-201ENSMUST00000040330 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smco4Q9JIS3 Papd4-205ENSMUST00000225868 3081 ntAPPRIS ALT1 BASIC14.04□□□□□ -0.16
Smco4Q9JIS3 Usp43-202ENSMUST00000108677 4447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
Smco4Q9JIS3 Ifitm10-201ENSMUST00000059223 3412 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Smco4Q9JIS3 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC14.03□□□□□ -0.16
Smco4Q9JIS3 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smco4Q9JIS3 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smco4Q9JIS3 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smco4Q9JIS3 Mbd3-203ENSMUST00000105348 1222 ntTSL 5 BASIC14.03□□□□□ -0.16
Smco4Q9JIS3 Fgf8-206ENSMUST00000111928 1056 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
Smco4Q9JIS3 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC14.03□□□□□ -0.16
Smco4Q9JIS3 Lin7b-201ENSMUST00000003971 735 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smco4Q9JIS3 Tmem150b-201ENSMUST00000086363 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smco4Q9JIS3 Fam216a-201ENSMUST00000031419 1388 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smco4Q9JIS3 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
Smco4Q9JIS3 Tox2-201ENSMUST00000099110 2166 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
Smco4Q9JIS3 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smco4Q9JIS3 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smco4Q9JIS3 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Smco4Q9JIS3 Med14-202ENSMUST00000096495 6963 ntAPPRIS P2 TSL 5 BASIC14.03□□□□□ -0.16
Smco4Q9JIS3 Megf9-202ENSMUST00000107359 7924 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Smco4Q9JIS3 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Smco4Q9JIS3 Sorbs1-213ENSMUST00000225153 3589 ntAPPRIS P4 BASIC14.02□□□□□ -0.16
Smco4Q9JIS3 Nipa2-201ENSMUST00000032635 3197 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Smco4Q9JIS3 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.16
Smco4Q9JIS3 Il6st-206ENSMUST00000183886 3004 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Smco4Q9JIS3 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Smco4Q9JIS3 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.16
Smco4Q9JIS3 Slc12a5-207ENSMUST00000202223 5690 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
Smco4Q9JIS3 Arhgef25-212ENSMUST00000222006 1896 ntTSL 5 BASIC14.02□□□□□ -0.16
Smco4Q9JIS3 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
Smco4Q9JIS3 Gm42911-201ENSMUST00000199360 1630 ntBASIC14.02□□□□□ -0.16
Smco4Q9JIS3 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
Smco4Q9JIS3 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Smco4Q9JIS3 Unc119-201ENSMUST00000002127 1329 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Smco4Q9JIS3 Gnas-202ENSMUST00000087871 3903 ntAPPRIS P4 TSL 1 (best) BASIC14.02□□□□□ -0.17
Smco4Q9JIS3 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC14.02□□□□□ -0.17
Smco4Q9JIS3 Golim4-201ENSMUST00000038563 5546 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
Smco4Q9JIS3 Usp27x-201ENSMUST00000115744 3240 ntAPPRIS P1 BASIC14.02□□□□□ -0.17
Smco4Q9JIS3 Slc35e4-202ENSMUST00000109995 3063 ntAPPRIS ALT1 TSL 5 BASIC14.02□□□□□ -0.17
Smco4Q9JIS3 Slc35e4-201ENSMUST00000051207 3059 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
Smco4Q9JIS3 Pcsk5-201ENSMUST00000025618 6675 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
Smco4Q9JIS3 Ppp4r3a-201ENSMUST00000048305 4516 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Smco4Q9JIS3 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Smco4Q9JIS3 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Smco4Q9JIS3 Gm19430-201ENSMUST00000193847 2137 ntBASIC14.02□□□□□ -0.17
Smco4Q9JIS3 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Smco4Q9JIS3 Nsmf-207ENSMUST00000116574 2863 ntTSL 5 BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 Pick1-206ENSMUST00000166155 1699 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 2210011C24Rik-204ENSMUST00000190457 1351 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 Rps6ka1-201ENSMUST00000003741 3085 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 Mipep-201ENSMUST00000063562 3015 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 Lhpp-202ENSMUST00000106170 999 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 Cuta-201ENSMUST00000025027 639 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 Cadps2-202ENSMUST00000069074 3935 ntTSL 5 BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 E130311K13Rik-201ENSMUST00000061706 1640 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 Trim31-201ENSMUST00000078438 2257 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
Smco4Q9JIS3 Arhgef9-216ENSMUST00000197206 2227 ntTSL 5 BASIC14□□□□□ -0.17
Smco4Q9JIS3 Angptl6-201ENSMUST00000043726 1582 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Smco4Q9JIS3 Ube2e2-205ENSMUST00000150727 1523 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Smco4Q9JIS3 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Smco4Q9JIS3 Tmed4-201ENSMUST00000004508 2003 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Smco4Q9JIS3 Mfsd10-201ENSMUST00000001109 1907 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Smco4Q9JIS3 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Smco4Q9JIS3 Rflnb-201ENSMUST00000021207 3512 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Smco4Q9JIS3 Fam110a-204ENSMUST00000109865 1853 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
Smco4Q9JIS3 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Smco4Q9JIS3 Gm37374-201ENSMUST00000194954 1829 ntBASIC14□□□□□ -0.17
Smco4Q9JIS3 H2-Q7-204ENSMUST00000116598 1134 ntTSL 5 BASIC14□□□□□ -0.17
Smco4Q9JIS3 Rtl10-201ENSMUST00000146673 865 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Smco4Q9JIS3 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC14□□□□□ -0.17
Smco4Q9JIS3 Gm7544-201ENSMUST00000222426 828 ntAPPRIS P1 BASIC14□□□□□ -0.17
Smco4Q9JIS3 Nsd1-203ENSMUST00000224156 1149 ntBASIC14□□□□□ -0.17
Smco4Q9JIS3 Trir-201ENSMUST00000047281 902 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Smco4Q9JIS3 Fbxo31-201ENSMUST00000059018 4358 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Smco4Q9JIS3 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
Smco4Q9JIS3 Tbl1x-201ENSMUST00000088217 5234 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Smco4Q9JIS3 Negr1-203ENSMUST00000106065 1953 ntTSL 1 (best) BASIC14□□□□□ -0.17
Smco4Q9JIS3 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Smco4Q9JIS3 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
Smco4Q9JIS3 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
Smco4Q9JIS3 Adamts17-201ENSMUST00000098382 6025 ntAPPRIS P2 TSL 5 BASIC13.99□□□□□ -0.17
Retrieved 100 of 76,532 protein–RNA pairs in 67.7 ms