Protein–RNA interactions for Protein: P41817

CUP9, Homeobox protein CUP9, yeastyeast

Predictions only

Length 306 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CUP9P41817 NFU1YKL040C 771 nt0.3□□□□□ -2.36
CUP9P41817 YCR001WYCR001W 315 nt0.29□□□□□ -2.36
CUP9P41817 snR72snR72 98 nt0.29□□□□□ -2.36
CUP9P41817 YER078W-AYER078W-A 165 nt0.29□□□□□ -2.36
CUP9P41817 TIM13YGR181W 318 nt0.28□□□□□ -2.36
CUP9P41817 RPS24BYIL069C 408 nt0.28□□□□□ -2.36
CUP9P41817 YIL134C-AYIL134C-A 204 nt0.28□□□□□ -2.36
CUP9P41817 YBL008W-AYBL008W-A 240 nt0.28□□□□□ -2.36
CUP9P41817 RPL26BYGR034W 384 nt0.27□□□□□ -2.37
CUP9P41817 YLR269CYLR269C 351 nt0.27□□□□□ -2.37
CUP9P41817 YBR064WYBR064W 429 nt0.27□□□□□ -2.37
CUP9P41817 YEL030C-AYEL030C-A 315 nt0.26□□□□□ -2.37
CUP9P41817 YGR290WYGR290W 444 nt0.26□□□□□ -2.37
CUP9P41817 RPL26AYLR344W 384 nt0.26□□□□□ -2.37
CUP9P41817 BSC3YLR465C 309 nt0.26□□□□□ -2.37
CUP9P41817 GPI15YNL038W 690 nt0.26□□□□□ -2.37
CUP9P41817 EMC4YGL231C 573 nt0.25□□□□□ -2.37
CUP9P41817 YNL319WYNL319W 441 nt0.25□□□□□ -2.37
CUP9P41817 YPL044CYPL044C 549 nt0.25□□□□□ -2.37
CUP9P41817 MCM10YIL150C 1716 nt0.24□□□□□ -2.37
CUP9P41817 ESP1YGR098C 4893 nt0.24□□□□□ -2.37
CUP9P41817 snR78snR78 87 nt0.24□□□□□ -2.37
CUP9P41817 RPF1YHR088W 888 nt0.24□□□□□ -2.37
CUP9P41817 snR51snR51 107 nt0.24□□□□□ -2.37
CUP9P41817 STE5YDR103W 2754 nt0.24□□□□□ -2.37
CUP9P41817 BUL2YML111W 2763 nt0.24□□□□□ -2.37
CUP9P41817 THO2YNL139C 4794 nt0.23□□□□□ -2.37
CUP9P41817 FYV10YIL097W 1551 nt0.23□□□□□ -2.37
CUP9P41817 YDL011CYDL011C 324 nt0.23□□□□□ -2.37
CUP9P41817 SBH1YER087C-B 249 nt0.23□□□□□ -2.37
CUP9P41817 YIR044CYIR044C 186 nt0.23□□□□□ -2.37
CUP9P41817 YKL123WYKL123W 381 nt0.23□□□□□ -2.37
CUP9P41817 CUL3YGR003W 2235 nt0.23□□□□□ -2.37
CUP9P41817 ASE1YOR058C 2658 nt0.23□□□□□ -2.37
CUP9P41817 YPL185WYPL185W 396 nt0.22□□□□□ -2.37
CUP9P41817 SDH7YDR511W 402 nt0.21□□□□□ -2.38
CUP9P41817 OLI1Q0130 231 nt0.21□□□□□ -2.38
CUP9P41817 YJL020W-AYJL020W-A 258 nt0.21□□□□□ -2.38
CUP9P41817 YJL127W-AYJL127W-A 117 nt0.21□□□□□ -2.38
CUP9P41817 YBL071CYBL071C 309 nt0.21□□□□□ -2.38
CUP9P41817 YBR206WYBR206W 324 nt0.21□□□□□ -2.38
CUP9P41817 PBI2YNL015W 228 nt0.2□□□□□ -2.38
CUP9P41817 INP2YMR163C 2118 nt0.2□□□□□ -2.38
CUP9P41817 PET111YMR257C 2403 nt0.19□□□□□ -2.38
CUP9P41817 YAP6YDR259C 1152 nt0.19□□□□□ -2.38
CUP9P41817 RPS20YHL015W 366 nt0.19□□□□□ -2.38
CUP9P41817 YJR011CYJR011C 786 nt0.19□□□□□ -2.38
CUP9P41817 BEM3YPL115C 3387 nt0.19□□□□□ -2.38
CUP9P41817 UTP8YGR128C 2142 nt0.19□□□□□ -2.38
CUP9P41817 YER084W-AYER084W-A 513 nt0.18□□□□□ -2.38
CUP9P41817 NIP100YPL174C 2607 nt0.18□□□□□ -2.38
CUP9P41817 tR(UCU)Q1tR(UCU)Q1 73 nt0.17□□□□□ -2.38
CUP9P41817 MAM33YIL070C 801 nt0.17□□□□□ -2.38
CUP9P41817 YML108WYML108W 318 nt0.17□□□□□ -2.38
CUP9P41817 YFR012W-AYFR012W-A 87 nt0.16□□□□□ -2.38
CUP9P41817 EAF6YJR082C 342 nt0.16□□□□□ -2.38
CUP9P41817 ZEO1YOL109W 342 nt0.16□□□□□ -2.38
CUP9P41817 MYO1YHR023W 5787 nt0.15□□□□□ -2.39
CUP9P41817 MLP1YKR095W 5628 nt0.15□□□□□ -2.39
CUP9P41817 YHL041WYHL041W 450 nt0.15□□□□□ -2.39
CUP9P41817 YOR192C-CYOR192C-C 237 nt0.15□□□□□ -2.39
CUP9P41817 VIK1YPL253C 1944 nt0.15□□□□□ -2.39
CUP9P41817 YBL100W-BYBL100W-B 5313 nt0.14□□□□□ -2.39
CUP9P41817 PTP2YOR208W 2253 nt0.14□□□□□ -2.39
CUP9P41817 YHR125WYHR125W 306 nt0.14□□□□□ -2.39
CUP9P41817 AIM29YKR074W 468 nt0.14□□□□□ -2.39
CUP9P41817 YLR287CYLR287C 1068 nt0.14□□□□□ -2.39
CUP9P41817 YPL229WYPL229W 621 nt0.14□□□□□ -2.39
CUP9P41817 PRP5YBR237W 2550 nt0.13□□□□□ -2.39
CUP9P41817 ATG31YDR022C 591 nt0.13□□□□□ -2.39
CUP9P41817 PAA1YDR071C 576 nt0.13□□□□□ -2.39
CUP9P41817 YNL058CYNL058C 951 nt0.13□□□□□ -2.39
CUP9P41817 YOL013W-AYOL013W-A 192 nt0.13□□□□□ -2.39
CUP9P41817 YPR160W-AYPR160W-A 81 nt0.13□□□□□ -2.39
CUP9P41817 HAL9YOL089C 3093 nt0.12□□□□□ -2.39
CUP9P41817 YOR192C-BYOR192C-B 5313 nt0.12□□□□□ -2.39
CUP9P41817 STE18YJR086W 333 nt0.12□□□□□ -2.39
CUP9P41817 YNL054W-BYNL054W-B 5250 nt0.12□□□□□ -2.39
CUP9P41817 SPO21YOL091W 1830 nt0.11□□□□□ -2.39
CUP9P41817 OST4YDL232W 111 nt0.11□□□□□ -2.39
CUP9P41817 SEC8YPR055W 3198 nt0.1□□□□□ -2.39
CUP9P41817 MLP2YIL149C 5040 nt0.1□□□□□ -2.39
CUP9P41817 COX5BYIL111W 456 nt0.1□□□□□ -2.39
CUP9P41817 DIE2YGR227W 1578 nt0.1□□□□□ -2.39
CUP9P41817 YKL083WYKL083W 615 nt0.08□□□□□ -2.4
CUP9P41817 YAL067W-AYAL067W-A 228 nt0.08□□□□□ -2.4
CUP9P41817 YNL211CYNL211C 261 nt0.08□□□□□ -2.4
CUP9P41817 PRP39YML046W 1890 nt0.07□□□□□ -2.4
CUP9P41817 PRP42YDR235W 1635 nt0.07□□□□□ -2.4
CUP9P41817 CBS1YDL069C 690 nt0.06□□□□□ -2.4
CUP9P41817 YHR130CYHR130C 336 nt0.06□□□□□ -2.4
CUP9P41817 YLR171WYLR171W 390 nt0.06□□□□□ -2.4
CUP9P41817 YLR399W-AYLR399W-A 105 nt0.06□□□□□ -2.4
CUP9P41817 YPR002C-AYPR002C-A 198 nt0.06□□□□□ -2.4
CUP9P41817 BI2Q0110 1272 nt0.05□□□□□ -2.4
CUP9P41817 YHL046W-AYHL046W-A 327 nt0.05□□□□□ -2.4
CUP9P41817 snR45snR45 172 nt0.05□□□□□ -2.4
CUP9P41817 COX12YLR038C 252 nt0.04□□□□□ -2.4
CUP9P41817 YOR345CYOR345C 351 nt0.04□□□□□ -2.4
CUP9P41817 snR54snR54 86 nt0.04□□□□□ -2.4
Retrieved 100 of 7,029 protein–RNA pairs in 72.1 ms