Protein–RNA interactions for Protein: P40968

CDC40, Pre-mRNA-processing factor 17, yeastyeast

Predicted RBP Predictions only

Length 455 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
CDC40P40968 YOR029WYOR029W 336 nt0.73□□□□□ -2.29
CDC40P40968 YLL007CYLL007C 1998 nt0.73□□□□□ -2.29
CDC40P40968 ATG31YDR022C 591 nt0.72□□□□□ -2.29
CDC40P40968 RPS20YHL015W 366 nt0.72□□□□□ -2.29
CDC40P40968 YHR063W-AYHR063W-A 336 nt0.72□□□□□ -2.29
CDC40P40968 YML007C-AYML007C-A 111 nt0.72□□□□□ -2.29
CDC40P40968 MYO1YHR023W 5787 nt0.72□□□□□ -2.29
CDC40P40968 YLR406C-AYLR406C-A 150 nt0.71□□□□□ -2.3
CDC40P40968 YOR282WYOR282W 321 nt0.71□□□□□ -2.3
CDC40P40968 YPR002C-AYPR002C-A 198 nt0.71□□□□□ -2.3
CDC40P40968 YPR159C-AYPR159C-A 102 nt0.71□□□□□ -2.3
CDC40P40968 PTP2YOR208W 2253 nt0.71□□□□□ -2.3
CDC40P40968 YDR426CYDR426C 378 nt0.7□□□□□ -2.3
CDC40P40968 YPL205CYPL205C 345 nt0.7□□□□□ -2.3
CDC40P40968 BFR2YDR299W 1605 nt0.7□□□□□ -2.3
CDC40P40968 YHL042WYHL042W 453 nt0.69□□□□□ -2.3
CDC40P40968 YKL063CYKL063C 504 nt0.69□□□□□ -2.3
CDC40P40968 Q0017Q0017 162 nt0.69□□□□□ -2.3
CDC40P40968 UBP3YER151C 2739 nt0.68□□□□□ -2.3
CDC40P40968 YJR011CYJR011C 786 nt0.68□□□□□ -2.3
CDC40P40968 YPL068CYPL068C 882 nt0.68□□□□□ -2.3
CDC40P40968 YPL185WYPL185W 396 nt0.68□□□□□ -2.3
CDC40P40968 PAU24YBR301W 363 nt0.68□□□□□ -2.3
CDC40P40968 SEC1YDR164C 2175 nt0.67□□□□□ -2.3
CDC40P40968 YLR434CYLR434C 384 nt0.67□□□□□ -2.3
CDC40P40968 YBR064WYBR064W 429 nt0.67□□□□□ -2.3
CDC40P40968 OLI1Q0130 231 nt0.66□□□□□ -2.3
CDC40P40968 STF2YGR008C 255 nt0.66□□□□□ -2.3
CDC40P40968 YLR202CYLR202C 327 nt0.66□□□□□ -2.3
CDC40P40968 RPL38YLR325C 237 nt0.66□□□□□ -2.3
CDC40P40968 YPL044CYPL044C 549 nt0.66□□□□□ -2.3
CDC40P40968 ECM12YHR021W-A 456 nt0.65□□□□□ -2.31
CDC40P40968 YMR031W-AYMR031W-A 327 nt0.65□□□□□ -2.31
CDC40P40968 YOR072W-AYOR072W-A 249 nt0.65□□□□□ -2.31
CDC40P40968 UTP10YJL109C 5310 nt0.65□□□□□ -2.31
CDC40P40968 YDR521WYDR521W 336 nt0.64□□□□□ -2.31
CDC40P40968 PCC1YKR095W-A 267 nt0.64□□□□□ -2.31
CDC40P40968 HUG1YML058W-A 207 nt0.64□□□□□ -2.31
CDC40P40968 YBR206WYBR206W 324 nt0.63□□□□□ -2.31
CDC40P40968 NPR2YEL062W 1848 nt0.63□□□□□ -2.31
CDC40P40968 MCM10YIL150C 1716 nt0.63□□□□□ -2.31
CDC40P40968 PMP1YCR024C-A 123 nt0.61□□□□□ -2.31
CDC40P40968 NIP100YPL174C 2607 nt0.61□□□□□ -2.31
CDC40P40968 CMC4YMR194C-B 222 nt0.6□□□□□ -2.31
CDC40P40968 YOR032W-AYOR032W-A 201 nt0.6□□□□□ -2.31
CDC40P40968 NOP9YJL010C 2001 nt0.6□□□□□ -2.31
CDC40P40968 SPO21YOL091W 1830 nt0.59□□□□□ -2.31
CDC40P40968 YCK3YER123W 1575 nt0.59□□□□□ -2.31
CDC40P40968 YMR272W-AYMR272W-A 114 nt0.59□□□□□ -2.31
CDC40P40968 NHP2YDL208W 471 nt0.58□□□□□ -2.32
CDC40P40968 YJR157WYJR157W 363 nt0.58□□□□□ -2.32
CDC40P40968 BSC3YLR465C 309 nt0.58□□□□□ -2.32
CDC40P40968 CHS6YJL099W 2241 nt0.58□□□□□ -2.32
CDC40P40968 YBR285WYBR285W 435 nt0.57□□□□□ -2.32
CDC40P40968 YML002WYML002W 2214 nt0.57□□□□□ -2.32
CDC40P40968 LTE1YAL024C 4308 nt0.57□□□□□ -2.32
CDC40P40968 HMRA2YCR096C 360 nt0.56□□□□□ -2.32
CDC40P40968 PAA1YDR071C 576 nt0.56□□□□□ -2.32
CDC40P40968 VPS20YMR077C 666 nt0.56□□□□□ -2.32
CDC40P40968 YNL324WYNL324W 396 nt0.56□□□□□ -2.32
CDC40P40968 YOR011W-AYOR011W-A 207 nt0.56□□□□□ -2.32
CDC40P40968 PRM3YPL192C 402 nt0.55□□□□□ -2.32
CDC40P40968 AGA2YGL032C 264 nt0.54□□□□□ -2.32
CDC40P40968 YOR053WYOR053W 342 nt0.54□□□□□ -2.32
CDC40P40968 YOR218CYOR218C 420 nt0.54□□□□□ -2.32
CDC40P40968 YER079WYER079W 633 nt0.53□□□□□ -2.32
CDC40P40968 YER137W-AYER137W-A 306 nt0.53□□□□□ -2.32
CDC40P40968 CSN9YDR179C 489 nt0.52□□□□□ -2.33
CDC40P40968 RPL26BYGR034W 384 nt0.52□□□□□ -2.33
CDC40P40968 INA22YIR024C 651 nt0.52□□□□□ -2.33
CDC40P40968 YAR029WYAR029W 225 nt0.52□□□□□ -2.33
CDC40P40968 YLR264C-AYLR264C-A 117 nt0.52□□□□□ -2.33
CDC40P40968 RPS30BYOR182C 192 nt0.52□□□□□ -2.33
CDC40P40968 UTP20YBL004W 7482 nt0.51□□□□□ -2.33
CDC40P40968 YIL134C-AYIL134C-A 204 nt0.51□□□□□ -2.33
CDC40P40968 OST1YJL002C 1431 nt0.51□□□□□ -2.33
CDC40P40968 YNL211CYNL211C 261 nt0.51□□□□□ -2.33
CDC40P40968 tF(GAA)BtF(GAA)B 73 nt0.5□□□□□ -2.33
CDC40P40968 tF(GAA)FtF(GAA)F 73 nt0.5□□□□□ -2.33
CDC40P40968 tF(GAA)GtF(GAA)G 73 nt0.5□□□□□ -2.33
CDC40P40968 tF(GAA)H1tF(GAA)H1 73 nt0.5□□□□□ -2.33
CDC40P40968 tF(GAA)H2tF(GAA)H2 73 nt0.5□□□□□ -2.33
CDC40P40968 tF(GAA)MtF(GAA)M 73 nt0.5□□□□□ -2.33
CDC40P40968 tF(GAA)P1tF(GAA)P1 73 nt0.5□□□□□ -2.33
CDC40P40968 tF(GAA)P2tF(GAA)P2 73 nt0.5□□□□□ -2.33
CDC40P40968 YFR012W-AYFR012W-A 87 nt0.5□□□□□ -2.33
CDC40P40968 SGF11YPL047W 300 nt0.5□□□□□ -2.33
CDC40P40968 FMP27YLR454W 7887 nt0.5□□□□□ -2.33
CDC40P40968 YLR334CYLR334C 381 nt0.49□□□□□ -2.33
CDC40P40968 YOR121CYOR121C 306 nt0.49□□□□□ -2.33
CDC40P40968 tT(AGU)BtT(AGU)B 73 nt0.48□□□□□ -2.33
CDC40P40968 tT(AGU)CtT(AGU)C 73 nt0.48□□□□□ -2.33
CDC40P40968 tT(AGU)DtT(AGU)D 73 nt0.48□□□□□ -2.33
CDC40P40968 tT(AGU)HtT(AGU)H 73 nt0.48□□□□□ -2.33
CDC40P40968 tT(AGU)I1tT(AGU)I1 73 nt0.48□□□□□ -2.33
CDC40P40968 tT(AGU)I2tT(AGU)I2 73 nt0.48□□□□□ -2.33
CDC40P40968 tT(AGU)JtT(AGU)J 73 nt0.48□□□□□ -2.33
CDC40P40968 tT(AGU)N1tT(AGU)N1 73 nt0.48□□□□□ -2.33
CDC40P40968 tT(AGU)N2tT(AGU)N2 73 nt0.48□□□□□ -2.33
CDC40P40968 tT(AGU)O1tT(AGU)O1 73 nt0.48□□□□□ -2.33
Retrieved 100 of 7,029 protein–RNA pairs in 48.7 ms